RnoEX0015864 @ rn6
Exon Skipping
Gene
ENSRNOG00000005840 | Cacfd1
Description
calcium channel flower domain containing 1 [Source:RGD Symbol;Acc:1311501]
Coordinates
chr3:5561760-5565801:+
Coord C1 exon
chr3:5561760-5561832
Coord A exon
chr3:5562842-5562967
Coord C2 exon
chr3:5565694-5565801
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCTACCTTCGCCCCTGCAGCAT
3' ss Score
9.45
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
CCTGTGCCATCTCTGGACTCTTCAACTGCGTCACGATCCACCCTCTGAACATCGCAGCTGGGGTGTGGATGAT
Seq A exon
CATGAACGCCTTTATCCTGTTGCTGTGTGAGGCCCCCTTCTGCTGCCAGTTTGTGGAGTTTGCAAACACAGTAGCTGAGAAGGTTGACCGGCTGCGCTCCTGGCAGAAGGCCGTCTTCTACTGCGG
Seq C2 exon
GATGGCCATCGTCCCCATCGTCATGAGCCTGACCCTGACTACACTGCTGGGCAACGCCATCGCCTTCGCCACGGGGGTGCTGTACGGACTGTCTGCCCTGGGCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005840_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=FE(21.8=100)
A:
PF102334=Cg6151-P=FE(38.2=100)
C2:
PF102334=Cg6151-P=FE(32.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGCCATCTCTGGACTCT
R:
GGCAGACAGTCCGTACAGCA
Band lengths:
170-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]