GgaEX1011724 @ galGal4
Exon Skipping
Gene
ENSGALG00000026576 | C17H9ORF7
Description
calcium channel flower homolog [Source:RefSeq peptide;Acc:NP_001264586]
Coordinates
chr17:6926862-6933084:+
Coord C1 exon
chr17:6926862-6927237
Coord A exon
chr17:6930895-6930967
Coord C2 exon
chr17:6932072-6933084
Length
73 bp
Sequences
Splice sites
3' ss Seq
AAGTCTCTTTTCCTCCCCAGCTT
3' ss Score
6.8
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GACGTGGAGGCTGCTCCCACGGCCGCTGGCATCGCTGCTGCGGTCAGAAACCCTCTATTGTCAGCCCTGGGGGGCCCGGCCCCGTATGGGGGTGCGAGGAGAGGCCCAGCAGCAGCAGGGCCGGGTTAGGGGCCGTCTCCTGGTCCTGCTGGAGGAGGGGGAAGTGTCACCTGGAGGGGCATCCAGCGCTGCTGGGGCTCAGGTGGGAAGCGGGGAGCTGCCCTTTGACCCCCCAGCAGCAGCAGCGGGGCCATGAGCTCTCAGGATGAGCAGTTCCAAGCAGCAGCCCCCGAGTCAGCATCTTCCTCCGCCGATGATGGCATGACCTGGTGGTACAGGTGGCTCTGCAGGATTGCCGGGGTCATCGGGGGCGTGT
Seq A exon
CTTGTGCTGTTGCTGGTCTCTGGAACTGTGTTACCATCAACCCACTGAACATAGCAGCCGGAGTGTGGATGAT
Seq C2 exon
GGGAGATGCCATTTCCTACGCTCGGATCCACCAGCAGCAGAAGCAAATGGATGAAGAGAAGCTCACGGGGTGCCTGGAGGGACAGGCTCTGTGAAGTGCGTGAGCCCAGGGTGACCTTTTGGACCCTGAGATGGTGGTGAAGATTTGGAAACCCACTCTGCCCTCCCCTCTGCTCAACCCCTCTCCATCACTCCACGATTTCCCTGGACACTACAGCAACAACTGGAGCTCTCAGGGCCGGGGTGGGCTGTGCCCCCCTCACACACCAGCAGTTGGACCTCAGTGCTTTGGCTGCTCCCTCCTCCTGCCCACTCAGAACCAAATATCTCATGGTCCTTCTTTTTCTTTCTTTCTTCCTTTCTTTTTTTTCTTCTTTTTTTATGGCAGGGGTGCTGGCCCTTTGAGTGCTGCTGTATAAGCCTAAACACGTAGCCTTTCTCTGGTTTTGATGCCCATCACATTTTGCTGGGAACTGTGTGTGGGCAGCACACTCTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026576_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PU(6.4=16.7)
A:
PF102334=Cg6151-P=FE(21.8=100)
C2:
PF102334=Cg6151-P=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGGTGGCTCTGCAGGATT
R:
ACCACCATCTCAGGGTCCAAA
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]