BtaEX6047329 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015097 | MGC139698
Description
Bos taurus calcium channel flower domain containing 1 (CACFD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080263]
Coordinates
chr11:104408232-104412270:+
Coord C1 exon
chr11:104408232-104408379
Coord A exon
chr11:104411528-104411600
Coord C2 exon
chr11:104412145-104412270
Length
73 bp
Sequences
Splice sites
3' ss Seq
TCGTGTGTTTCTCTTTCCAGCTT
3' ss Score
10.19
5' ss Seq
GGTGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
CGGCGGGCAGCGCCGGACGGCTGCACCATGAGCGGCGCGGGCGGGGCGGCGGTGGCGCCCGGGAGCTCGGCGCAGCCCGCGCAGGAGGAGGGCATGACGTGGTGGTACCGCTGGCTGTGTCGCCTGTCGGGGGTGTTAGGGGCAGTCT
Seq A exon
CTTGTGCGATCTCGGGCCTCTTCAACTGCATCACCATCCATCCTCTGAACATCGCGGCCGGCGTGTGGATGGT
Seq C2 exon
CATGAACGCCTCTGTCCTGCTGCTGTGCGAGGCGCCCTTCTGCTGCCAGTTCATGGAGTTTGCGAACGCTGTGGCAGCCAAGGCAGACCGGCTGCGCTCCTGGCAGAAGGCCGTCTTCTACTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015097-'0-2,'0-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PU(6.4=17.1)
A:
PF102334=Cg6151-P=FE(21.8=100)
C2:
PF102334=Cg6151-P=FE(38.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGACGTGGTGGTACCGC
R:
CCGCAGTAGAAGACGGCCTT
Band lengths:
182-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]