HsaEX0011716 @ hg38
Exon Skipping
Gene
ENSG00000160325 | CACFD1
Description
calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:HGNC:1365]
Coordinates
chr9:133459965-133465447:+
Coord C1 exon
chr9:133459965-133460187
Coord A exon
chr9:133463483-133463555
Coord C2 exon
chr9:133465322-133465447
Length
73 bp
Sequences
Splice sites
3' ss Seq
CCCGTGTCTCTTGTTTCAAGCTT
3' ss Score
7.93
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ATGCTAATATGCTCCCTCTCCCACAAGGCAGCGCGCCGGCTCGGACGCGGCCGGCTACCGAGCCCTTTGTGAGGGCTGTGAGCTGCGCCTGACGGTGGCACCATGAGCAGCTCAGGTGGGGCGCCCGGGGCGTCCGCCAGCTCTGCGCCGCCCGCGCAGGAAGAGGGCATGACGTGGTGGTACCGCTGGCTGTGTCGCCTGTCTGGGGTGCTGGGGGCAGTCT
Seq A exon
CTTGCGCGATCTCTGGCCTCTTCAACTGCATCACCATCCACCCTCTGAACATTGCGGCCGGCGTGTGGATGAT
Seq C2 exon
CATGAATGCCTTCATCTTGTTGCTGTGTGAGGCGCCCTTCTGCTGCCAGTTCATCGAGTTTGCAAACACAGTGGCGGAGAAGGTGGACCGGCTGCGCTCCTGGCAGAAGGCTGTCTTCTACTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160325-'0-5,'0-2,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PU(20.6=17.1)
A:
PF102334=Cg6151-P=FE(70.6=100),PF102334=Cg6151-P=PU(7.5=12.0)
C2:
PF102334=Cg6151-P=FE(38.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATGAGCAGCTCAGGTG
R:
GATGAACTGGCAGCAGAAGGG
Band lengths:
180-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development