RnoEX0015863 @ rn6
Exon Skipping
Gene
ENSRNOG00000005840 | Cacfd1
Description
calcium channel flower domain containing 1 [Source:RGD Symbol;Acc:1311501]
Coordinates
chr3:5557975-5565801:+
Coord C1 exon
chr3:5557975-5558821
Coord A exon
chr3:5561760-5561832
Coord C2 exon
chr3:5565694-5565801
Length
73 bp
Sequences
Splice sites
3' ss Seq
CATTGTCTTTTGTTTTGAAGCCT
3' ss Score
7.33
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GGACTGGGAGTTGGAGATCAGAAAAGCAATCCCAGTCCTCAGGGCTAATAAAGGATACAGGAAACCAGACTGGAGTTTTCCTCCCATAACTTGCTGCCCACAGCAAGCCTGGCTTGAAAGCTTATTTTACTGAAAGGCGTGGTTCCCTGGAGGTCTGAACAGACCCTTTGCCACTTCTAGATGACCTCTTCCAATCTTGGGAAGAGAAAAGACCAGTCCAGACCCAGCGTACCTGTAAACACGCCCCTTCTCCGCCATTTCTCCCCGCCCCCGGCTATGGCCTGCGGGTCCGCCCCTATGCTAATCACCGCCTCTCCCACAAGGCCGCGCGCGGGTGGACACGTCCCTTTGTGCGCGCCCGGTGCTGCGCGCAGCGTTCAGCATGAGCGGCTCGGTCGCCGCCGGAGCGGCCGCCGGCCCAGTCCCGCCGGCGCAAGAGGAGGGCATGACATGGTGGTACCGGTGGCTGTGCCGCCTGGCGGGAGTGCTAGGGGCAGTGT
Seq A exon
CCTGTGCCATCTCTGGACTCTTCAACTGCGTCACGATCCACCCTCTGAACATCGCAGCTGGGGTGTGGATGAT
Seq C2 exon
GATGGCCATCGTCCCCATCGTCATGAGCCTGACCCTGACTACACTGCTGGGCAACGCCATCGCCTTCGCCACGGGGGTGCTGTACGGACTGTCTGCCCTGGGCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005840_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PU(6.4=17.5)
A:
PF102334=Cg6151-P=FE(21.8=100)
C2:
PF102334=Cg6151-P=FE(32.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCAGCATGAGCGGCTC
R:
AGTGTAGTCAGGGTCAGGCTC
Band lengths:
171-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]