MmuEX6099818 @ mm9
Exon Skipping
Gene
ENSMUSG00000015488 | 5930434B04Rik
Description
RIKEN cDNA 5930434B04 gene [Source:MGI Symbol;Acc:MGI:1924317]
Coordinates
chr2:26865446-26871129:+
Coord C1 exon
chr2:26865446-26865625
Coord A exon
chr2:26869613-26869685
Coord C2 exon
chr2:26871004-26871129
Length
73 bp
Sequences
Splice sites
3' ss Seq
CATTGTCTCTTGTTTTGAAGCCT
3' ss Score
7.07
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
AAGGCCGCGCGCGGGTGGACACGTCTCTTTGTGCGCGCCTGGGGCTGCGCGCAGCGTTTAGCATGAGCGGCTCGGGCGCCGCCGGAGCGGCCGCGGGCCCAGCCCCGCCGGCACAGGAAGAGGGCATGACTTGGTGGTACCGCTGGCTGTGCCGCCTGGCGGGAGTGCTAGGAGCGGTGT
Seq A exon
CCTGTGCCATCTCTGGACTCTTCAACTGCGTCACTATCCACCCTCTGAACATCGCAGCTGGCGTGTGGATGAT
Seq C2 exon
CATGAACGCCTTCATCCTGTTGTTGTGCGAGGCTCCCTTCTGCTGCCAGTTTGTGGAGTTTGCAAACACAGTAGCTGAGAAGGTTGACCGGCTGCGCTCCTGGCAGAAGGCTGTCTTCTACTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015488-'0-3,'0-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085075=COPI_assoc=PU(26.5=45.0),PF102334=Cg6151-P=PU(9.0=17.5)
A:
PF085075=COPI_assoc=FE(35.3=100),PF102334=Cg6151-P=FE(30.8=100)
C2:
PF085075=COPI_assoc=PD(37.7=59.1),PF102334=Cg6151-P=PD(56.8=95.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGGCATGACTTGGTGG
R:
GAAGACAGCCTTCTGCCAGGA
Band lengths:
182-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: