DreEX0002268 @ danRer10
Exon Skipping
Gene
ENSDARG00000090818 | CACFD1
Description
calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:HGNC:1365]
Coordinates
chr21:5845640-5852723:-
Coord C1 exon
chr21:5852110-5852723
Coord A exon
chr21:5845861-5845933
Coord C2 exon
chr21:5845640-5845765
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTAATCTAAATGTTTTCTAGCAT
3' ss Score
6.27
5' ss Seq
GGTGTAAGA
5' ss Score
3.6
Exon sequences
Seq C1 exon
AAACCATCTGAACTCGACATTTTTACAAATACACGCTTTTCTGACAGGTTTGGAGTATATCTGGATGTGTAACGTTAGCTGTCTTCTGCCTCTATAACACCATAATAACAGCAGCGGCGTCAGGTAAATAACGGCGCGTTATTCTCCTCACAGCGATATTTTCAACCATTTTTTACTTTAAAGGACCGATTTCTCGCTCATATTTTAAAGTCCCGGTTCTTTTATAACTTTATTCCGCAATTAGTTTATTTGCCTGACACTACAGTCAGCTGTAGTTTCCAGCTATTGTCCTTTTCTTGGAAACAGCGACTCCTCAGGCCGCCACTGGTACTGCAGGTGCCGCTGTGCTGTAAGTGAGACACTGGGAGCCTGAATAATTCAACAGTGGAAAATGAGCACAGAAGAGGCTGAAGCACCAACCAAAACTGCCACAGATGAGGATGGCATGTCCTGGTGGTACCGCTGGATCTGCAAACTGGCCGGTGTGCTAGGTGGCATAT
Seq A exon
CATGTGCAACAATGGGCGTTTGGAACTGTGTTACTGTGCATCCGCTGAACATAGCTGCTGGAGTTTGGATGGT
Seq C2 exon
GTTGACAGCGTTTGTGCTGTTTCTGTGTGAGGTGCCGTTCTGCTGTCAGTTTGTGGAGTTTGCTAATGCAGTGGCGGCGCGTGCAGATCGACTGAAGCCCTGGCAGAAAGCACTCTTCTACTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090818_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PU(6.4=18.9)
A:
PF102334=Cg6151-P=FE(21.8=100)
C2:
PF102334=Cg6151-P=FE(38.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCATGTCCTGGTGGTAC
R:
CTTTCTGCCAGGGCTTCAGTC
Band lengths:
171-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]