GgaINT0126400 @ galGal4
Intron Retention
Gene
ENSGALG00000026576 | C17H9ORF7
Description
calcium channel flower homolog [Source:RefSeq peptide;Acc:NP_001264586]
Coordinates
chr17:6926862-6930967:+
Coord C1 exon
chr17:6926862-6927237
Coord A exon
chr17:6927238-6930894
Coord C2 exon
chr17:6930895-6930967
Length
3657 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
AAGTCTCTTTTCCTCCCCAGCTT
3' ss Score
6.8
Exon sequences
Seq C1 exon
GACGTGGAGGCTGCTCCCACGGCCGCTGGCATCGCTGCTGCGGTCAGAAACCCTCTATTGTCAGCCCTGGGGGGCCCGGCCCCGTATGGGGGTGCGAGGAGAGGCCCAGCAGCAGCAGGGCCGGGTTAGGGGCCGTCTCCTGGTCCTGCTGGAGGAGGGGGAAGTGTCACCTGGAGGGGCATCCAGCGCTGCTGGGGCTCAGGTGGGAAGCGGGGAGCTGCCCTTTGACCCCCCAGCAGCAGCAGCGGGGCCATGAGCTCTCAGGATGAGCAGTTCCAAGCAGCAGCCCCCGAGTCAGCATCTTCCTCCGCCGATGATGGCATGACCTGGTGGTACAGGTGGCTCTGCAGGATTGCCGGGGTCATCGGGGGCGTGT
Seq A exon
GTAAGTATCCCCTCCTCACAGCCGGCGGTTCCCCATTGGCTCTGCTCATGCATGCAAAAGCGTAAGTCAGGGGTCGTGCTGCTGGTCCTTGGGTTATGTTTGTGCGTGGGGAGGCGGGCCCTGAAATAATCATCTGGGGTTGCAGGTCTGTAACTTCTCTACACGTGCGTTTTGCTGTGTTTCGGGCAGAAGGAAGAGGTGAAAAGCGGGGTGACTTTAGTCGAGTGCTGTGCTTTGTGCTTGCTGAACTTGCTGAACTTCGGCACCTGGGAGAAGGGGCGTCACCGGGGGGGGATCTGCAAATCCTCCGGCTTCGTCTTGGATAAAAATCATCTCCCATCACCGGGAGCGATGGGAGCAGCAGCTAAACCCCTGTCCTGCGGGAGGGCTGTGGGCAGATAAAGCAGACAACAACTGTACGGCGAGCACCAGGCTGAGCAGGGTCAGGTGCAGGGCTTGAACTGGGGCCACAGGGCTCGATTCATCCTATTGGGCTGTCAGGTGTTTGCGTGTTCCTTCCACTTATTTTCTTCCCCTGCTCTGAGCGTCAGAGCATGTTTCCCGTCGCTCCTGCTGTTTATCACAGGGGCCCTGGCTGTGTTTATTGAAGGCAAATAACAAACTCGGTTTGCACTGTTTGTTCTTTAAGGGGTTTAAGTCTTGGACATGCAGAAGACAGGAGACAGCGCACAGCGAAGCGAGTTGGCTGGCTGGGAATTACCTGCTGCTGATGAGAATTTTCCCAGGGAAAGAGCTTTTGCACCTTTGCCAGGAATCAGCTGTGTCCTGTGAGGAGATTAATAGCTCTTAAAAGTAGGAGGGACTGTTATGACTGCTTGGTCTGATCTCCTGCAGAGCGCAGGACGGAGAACAACTTCTGCTTCGGGTCCATGGCTTGAGTGCTAAAACAAGAGTGTTTCTCTGCTAGTATGGTCAGACCAGATCTGCTCCCTGTGCTGCAGTGTTTCGGCTGGTCCTGACCACCTCTGTGCCTGGCTTCTGCCTTGGCTCCACCTGCCTGGCCACCTGATGGAGCCAGGCCGTGGGCTTTGTTACCCAGCCCTGCGCCCTGCGGCATCGCCATGTGGCCTCTGCAGCCCTTTGTGGTTGGATGCTGCTCTCACTGTGTTATGTCTGAGCTGCTGAGAGAGGCATGAAAATGTGAAGTGAAACGCACCGGCCATGGGCCCCATGCCTGTGGTGGAGGCCCCTCCAGCCCCACGCCTGTAATGGAGGCAGGAGGCTGGACGGGGCACGTCGGAGGGCAGCTCCCTGAGCAGCAGCCTTGCTGTGGACTGGGGTTGCAACCAGAATCTCATCACCCTTCATGTGGCCTTAACCTTCACGGGGTGAAGATGGGGGCTGAGGAGCCCAAGATGGCGGCTGTTGGTTCACGCCGTGTGCCGGAGCAGCTCAGCCCTGCCTTAGCAGCAGCACAGCACTTTGAAATCAATTTTTTCCCCTCTATTTTCAGCTTCCAAAGCAGCTGAGTTACGCTTGGATTCTTTTTGCAACCTTTTGTTCACACCTTCGCACAACTCCTGCCTTGTTTTCAAAGAGTTGTATACCTGTGGGTGTCTCTGGGCAAAGCAGCCGTCCGTGGGGCTGCCAGGAGTTCAGGGCATCAGGAACCTCCACGAGGGCACCTGTGGCCTGCAGGAGTAAGTCAGAAAGGTGCAGGGACTGGAGCAGGAGGAGCAGGCCAAACATGGGATCTGCTGCTGGCTCCTGCACAGCCTGGTTGGTGAGCTTGGCTGAGTCCCTTCTCCCCCTTCTGTTCCCGTGTGTAAAAGGATGAGAGCCTGTGGCTTTTGTAAAATGCTCCAGGAGCAAAAATAGAGTTGCATTGAAGACAGTGACCAGCTGCTGGGAATGAATAGAGTCTGTGTGGGGGGCATTCTTTCTTTTTTCCTTCCTCCTTTTAGCTCCCAGTTATTTGTTCTTCCCCGGGGCTTTCGGGATGGGACAGCAGTTAAACAAATGGCAGGGCTGTCTCCCATCGCTTACGTGCCATGGAGCATTATCTAAACGTTATTCCCCTTCTGAGCCTTTGTTTTGCAAAAAGAAGTCACTGAGCTGGCAGCTCCGTCCCCTTTTGGCTATGGAGGCAGGAGCTGATACTGCCCGGCGGGACCAGGAAGTGCCAGGCTGCTGCGGGATGCGCTGCGCTGCAGAGGAGAGCGAAGGTCACCCAATCGTTATCTGTGGCTGTTGGCAGCCACCATCGAGTGCAGTGCTCCTGGGCTTACAGAGCTCTGACTCCTTCCCCTCTCGTTGGTGTTTGTGCTGATGTAGGGGGTTGCTCGGCTCAGGCTTGCTGGGTCCGTTGGCAGATGCAGTGAGCTCTCAGCTGGGGTTCCTGCAAGGGCCTTCAGTGCTCAGGGGTTGTGTTGGGGTGTTTGAGGGCTGATTGGTTTGGTAAAAAAGAAATGACTGAGGACAAAAATCCCGAGCTCTCCTTCCACGAGCATCCAAGGGTTCGTTGATCAGAGAGAAGAGTTAGAACACTCCACGTGCTGCTGCTGCTCCCTGCAGTACTGCTTGCTTGCTTTTCCAGCTCTCGAGCTGTCTGCATGTGTGACTGTGAGCGGATCAGCCCACCCCCGTGCCTCAGTTTCTCCCCGCAGAGTGAGGACACTGACACTGTCCCTTTGTGATGGGATGGGCTGTTGGAGCGTGGCTGGCAGTGTGTCGTCTGGCATTTCTGCTCTGCTGGAACCTTGCTCTTGCAGGACACACCGAGTTCTATGGGATAGACCTAGGAATGCTTTAAAAAATAAGAGTGGTGGTGGTGTTGTTTTGCAGAAATAGGAGTCTGCTTGCTTGTGGGATGACCTCACACTGGTCCTGTCCTAGGCATGCAGCTCTGTTTCTCAGTTTGGTCAGTAATGGAACCTTGAGGATTCAGCAGTGACTGCTTACAAGAAGAAACCTTGCAAAATGTGCCAGGCTTGTGAAGGTCAGAACTGCTCAGAGCAGCCCTGTGCAGGAATTCCCTTAGCAAAACGTGTGTGGACATGAACTACCTGCATCCAGGCTGCTCTCATTCTCAGAGACACACTGCTTGCTCTCTTCATTACGCAGCATTATGTCCCAGGACAGCTTAAAGGCTGTAAGATTTTAGCTGCTGTTTTGTGCTGTGCTGTTGTTTACTGGGGACTCAGGTTCCTGGCTGAGCAGCCATATCAAGTGCAGGAAACGCTTTGCAAGTTTAATGAGGCAGGAGAGAGGTGTGTGGATGCTGCTGGCTGCTTCCCTCCTTGCATTACAAATTCAGGAGCACAGGAGCTATTCTGAGCCTTGCTTTAGCCAGCATCCACTTCCATTTGAATAAATGGAGACCCAGACTTGGCTTTTTCTTGGCCCATCTCTGGCAGTGATGCACAGAACTGGGAGTGTGTGGCTGTGCTGGGGTTCACCTCTCCTTTTCTGTTTTCAGTCCTAACACCTCAGTGCTGCAAGTCATGTTTGGTTTCTTTTTGCTGAGCTTTTCCCTGTGCTGCTCAGAGATGTGTGCCTGCAGGGTCCTCTTTCTTCACCCTGGGACAAAGCAGGAATTCCTTTGCACACAAAACCCTACCTTGCAGAGGTGACAGCCTGGCCTCGCTGCACGCTGGGTTGCTCTTTGTGTCAATGAAAGTCTCTTTTCCTCCCCAG
Seq C2 exon
CTTGTGCTGTTGCTGGTCTCTGGAACTGTGTTACCATCAACCCACTGAACATAGCAGCCGGAGTGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026576:ENSGALT00000042742:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PU(6.4=16.7)
A:
NA
C2:
PF102334=Cg6151-P=FE(21.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]