GgaINT0126400 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7594975-7600717:+
Coord C1 exon
chr17:7594975-7595286
Coord A exon
chr17:7595287-7600644
Coord C2 exon
chr17:7600645-7600717
Length
5358 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
AAGTCTCTTTTCCTCCCCAGCTT
3' ss Score
6.8
Exon sequences
Seq C1 exon
AGCCCTGGGGGGCCCGGCCCCGTATGGGGGTGCGAGGAGAGGCCCAGCAACAGCAGGGCCGGGTTAGGGGCCGTCTCCTGGTCCTGCTGGAGGAGGGGGGAAGTGTCACCTGGAGGGGCATCCAGCGCTGCTGGGGCTCAGGTGGGGAGCGGGGAGCTGCCCTTTGACCCCCCAGCAGCAGCGGGGCCATGAGCTCTCAGGATGAGCAGTTCCAAGCAGCAGCCCCCGAGTCAGCATCTTCCTCCGCTGATGATGGCATGACCTGGTGGTACAGGTGGCTCTGCAGGATTGCCGGGGTCATCGGGGGCGTGT
Seq A exon
GTAAGTATCCCCTCCTCACAGCCGGCGGTTCCCCATTGGCTCTGCTCATGCATGCAAAAGTGTAAGTCAGGGGTCGTGCTGCTGGTCCTTGGGTTATGTTTGTGCGTGGGGAGGCGGGCCCTGAAATAATCATCTGGGGTTGCAGGTTTGTAACTTCTCTACACGTGCGTTTTGCTGTGTTTCGGGCAGAAGGAAGAGGTGAAAAGCGGGGTGACTTTAGTCGAGTGCTGTGCTTTGTGCTTGCTGAACTTGCTGAACTTCGGCACCTGGGAGAAGGGGCGTCACCGGGGGGGGATCTGCAAATCCTCCGGCTTCGTCTTGGATAAAAATCATCTCCCATCACCGGGAGCGATGGGAGCAGCAGCTAAACCCCTGTCCTGCGGGAGGGCTGTGGGCAGATAAAGCAGACAACAACTGTACGGCGAGCACCAGGCTGAGCAGGGTCAGGTGCAGGGCTTGAACTGGGGCCACAGGGCTCGATTCATCCTATTGGGCTGTCAGGTGTTTGCGTGTTCCTTCCACTTATTTTCTTCCCCTGCTCTGAGCGTCAGAGCATGTTTCCCGTCGCTCCTGCTGTTTATCACAGGGGCCCTGGCTGTGTTTATTGAAGGCAAATAACAAACTCGGTTTGCACTGTTTGTTCTTTAAGGGGTTTAAGTCTTGGACATGCAGAAGACAGGAGACAGCGCACAGCGAAGCGAGTTGGCTGGCTGGGAATTACCTGCTGCTGATGAGAATTTTCCCAGGGAAAGAGCTTTTGCACCTTTGCCAGGAATCAGCTGTGTCCTGTGAGGAGATTAATAGCTCTTAAAAGTAGGAGGGACTGTTATGACTGCTTGGTCTGATCTCCTGCAGAGCGCAGGACGGAGAACAACTTCTGCTTCGGGTCCATGGCTTGAGTGCTAAAACAAGAGTGTTTCTCTGCTAGTATGGTCAGACCAGATCTGTTCCCTGTGCTGCAGTGTTTCGGCTGGTCCTGACCACCTCTGTGCCTGGCTTCTGCCTTGGCTCCACCTGTCTTGCCACCTGATGGAGCCAGGCCGTGGGCTTTGTTACCCAGCCCTGCGCCCTGCGGCATCGCCATGTGGCCTCTGCAGCCCTTTGTGGTTGGATGCTGCTCTCACTGTGTTATGTCTGAGCTGCTGAGAGAGGCATGAAAATGTGAAGTGAAACGCACCGGCCATGGGCCCCATGCCTGTGGTGGAGGCCCCTCCAGCCCCACGCCTGTAATGGAGGCAGGAGGCTGGACGGGGCACGTCGGAGGGCAGCTCCCTGAGCAGCAGCCTTGCTGTGGACTGGGGTTGCAACCAGAATCTCATCACCCTTCATGTGGCCTTAACCTTCACGGGGTGAAGATGGGGGCTGAGGAGCCCAAGATGGCGGCTGTTGGTTCACGCCGTGTGCCGGAGCAGCTCAGCCCTGCCTTAGCAGCAGCACAGCACTTTGAAATCAATTTTTTCCCCTCTATTTTCAGCTTCCAAAGCAGCTGAGTTACGCTTGGATTCTTTTTGCAACCTTTTGTTCACACCTTCGCACAACTCCTGCCTTGTTTTCAAAGAGTTGTATACCTGTGGGTGTCTCTGGGCAAAGCAGCCGTCCGTGGGGCTGCCAGGAGTTCAGGGCATCAGGAACCTCCACGAGGGCACCTGTGGCCTGCAGGAGTAAGTCAGAAAGGTGCAGGGACTGGAGCAGGAGGAGCAGGCCAAACATGGGATCTGCTGCTGGCTCCTGCACAGCCTGGTTGGTGAGCTTGGCTGAGTCCCTTCTCCCCCTTCTGTTCCCGTGTGTAAAAGGATGAGAGCCTGTGGCTTTTGTAAAATGCTCCAGGAGCAAAAATAGAGTTGCATTGAAGACAGTGACCAGCTGCTGGGAATGAATAGAGTCTGTGTGGGGGGCATTCTTTCTTTTTTCCTTCCTCCTTTTAGCTCCCAGTTATTTGTTCTTCCCCGGGGCTTTCGGGATGGGACAGCAGTTAAACAAATGGCAGGGCTGTCTCCCATCGCTTACGTGCCATGGAGCATTATCTAAACGTTATTCCCCTTCTGAGCCTTTGTTTTGCAAAAAGAAGTCACTGAGCTGGCAGCTCCGTCCCCTTTTGGCTATGGAGGCAGGAGCTGATACTGCCCGGCGGGACCAGGAAGTGCCAGGCTGCTGCGGGATGCGCTGCGCTGCAGAGGAGAGCGAAGGTCACCCAATCGTTATCTGTGGCTGTTGGCAGCCACCATCGAGTGCAGTGCTCCTGGGCTTACAGAGCTCTGACTCCTTCCCCTCTCGTTGGTGTTTGTGCTGATGTAGGGGGTTGCTCGGCTCAGGCTTGCTGGGTCCGTTGGCAGATGCAGTGAGCTCTCAGCTGGGGTTCCTGCAAGGGCCTTCAGTGCTCAGGGGTTGTGTTGGGGTGTTTGAGGGCTGATTGGTTTGGTAAAAAAGAAATGACTGAGGACAAAAATCCCGAGCTCTCCTTCCACGAGCATCCAAGGTTCGTTGATCAGAGAGAAGAGTTAGAACACTCCACGTGCTGCTGCTGCTCCCTGCAGAACTGCTTGCTTGCTTTTCCAGCTCTCGAGCTGTCTGCATGTGTGACTGTGAGCGGATCAGCCCACCCCCGTGCCTCAGTTTCCCCCCGCAGAGTGAGGACACTGACACAGTCCCTTTGTGATGGGATGGGCTGTTGGAGCGTGGCTGGCAGTGTGTCATCTGGCATTTCTGCTCTGCTGGAACGTTGCTCTTGCAGGACACACCGAGTTCTATGGGATAGACCTAGAAATGCTTTAAAAAATAAGAGTGGTGGTGGTGTTGTTTTGCAGAAATAGGAGTCTGCTTGCTTGTGGGATGACCTCACATTGGTCCTGTCCTAGGCATGCAGCTCTGTTTCTCAGTTTGGTCAGTAATGGAACCTTGAGGATTCAGCAGTGACTGCTTACGAGAAGAAACCTTGCAAAATGTACCAGGCTTGTGAAGGTCAGAACTGCTCAGAGCAGCCCTGTGCAGGAATTCCCTTAGCAAAACGTGTGTGGACATGAACTACCTGCATCCAGGCTGCTCTCATTCTCAGAGACACACTGCTTGCTCTCTTCATTACGCAGCTCTATGTCCCAGGACAGCTTAAAGGCTGTAAGATTTTAGCTGCTGTTTTGTGCTGTGCTGTTGTTTACTGGGGACTCAGGTTCCTGGCTGAGCAGCCATATCAAGTGCAGGAAACGCTTTGCAAGTTTAATGAGGCAGGAGAGAGGTGTGTGGATGCTGCTGGCTGCTTCCCCTCCTTGCATTACAAATTCTGGAGCACAGGAGCTATTCTGAGCCTTGCCTTAGCCAGCATCCACTTCCATTTGAATAGATGGACACCCAGACTTGGCTTTTACTTGGCCCTTCTCTGTCAGGGATGCTCGCTGCTATTTTTTCCTCCCATTCATAATGGACCGGGCATATTTCTCAAACCCCTTATAATGCCTATGCGATCTCAGTTGGTACTGACTACAATGTATTTTCTCTTTACCATGAACACGTCTGAGCTTATGTTCTATGAAGAAAATTTCCTGTATAAACCATCTACTTTTTTTTCAATGACAACATAGATTAATGCAATTCTCAACTGCCTTTGAAAAATTGATCCCATGTTTACAGAAAGAGGCCTGATCAACTGCAAGCTGGCCAGCCACTCATACTGATATACGATAGATACTGCTGGCATGTNNNNNNNNNNCGCTTACGTGCCATGGAGCATTATCTAAACGTTATTCCCCTTCTGAGCCTTTGTTTTGCAAAAAGAAGTCACTGAGCTGGCAGCTCCGTCCCCTTTTGGCTATGGAGGCAGGAGCTGATATTGCCCGGCGGGACCAGGAAGTGCCAGGCTGCTGCGGGATGCGCTGCTCTGCAGAGGAGAGCGAAGGTCACCCAATCGTTATCTGTGGCTGTTGGCAGCCACCATCGAGTGCAGTGCTCCTGGGCTTACAGAGCTTTGACTCCTTCCCCTCTCGTTGGTGTTTGTGCTGATGTAGGGGGTTGCTCGGCTCAGGCTTGCTGGGTCCGTTGGCAAATGCAGTGAGCTCTCAGCTGGGGTTCCTGCAAGGGCCTTCAGTGCTCAGGGGTTGTGTTGGGGTGTTTGAGGGCTGATTGGTTTGGTAAAAAAGAAATGACTGAGGACAAAAATCCCGAGCTCTCCTTCCACGAGCATCCAAGGGTTCGTTGATCAGAGAGAAGAGTTAGAACACTCCACGTGCTGCTGCTGCTCCCTGCAGTACTGCTTGCTTGCTTTTCCAGCTCTCGAGCTGTCTGCATGTGTGACTGTGAGCGGATCAGCCCACCCCCGTGCCTCAGTTTCTCCCCGCAGAGTGAGGACACTGACACTGTCCCTTTGTGATGGGATGGGCTGTTGGAGCGTGGCTGGCAGTGTGTCGTCTGGCATTTCTGCTCTGCTGGAACCTTGCTCTTGCAGGACACACCGAGTTCTATGGGATAGACCTAGGAATGCTTTAAAAAATAAGAGTGGTGGTGGTGTTGTTTTGCAGAAATAGGAGTCTGCTTGCTTGTGGGATGACCTCACACTGGTCCTGTCCTAGGCATGCAGCTCTGTTTCTCAGTTTGGTCAGTAATGGAACCTTGAGGATTCAGCAGTGACTGCTTACAAGAAGAAACCTTGCAAAATGTGCCAGGCTTGTGAAGGTCAGAACTGCTCAGAGCAGCCCTGTGCAGGAATTCCCTTAGCAAAACGTGTGTGGACATGAACTACCTGCATCCAGGCTGCTCTCATTCTCAGAGACACACTGCTTGCTCTCTTCATTATTCAGCATTATGTCCCAGGACAGCTTAAAGGCTGTAAGATTTTAGCTGCTGTTTTGTGCTGTGCTGTTGTTTACTGGGGACTCAGGTTCCTGGCTGAGCAGCCATATCAAGTGCAGGAAACGCTTTGCAAGTTTAATGAGGCAGGAGAGAGGTGTGTGGATGCTGCTGGCTGCTTCCCCTCCTTGCATTACAAATTCAGGAGCACAGGAGCTATTCTGAGCCTTGCTTTAGCCAGCATCCACTTCCATTTGAATAAATGGAGACCCAGACTTGGCTTTTTCTTGGCCCATCTCTGGCAGTGATGCACAGAACTGGGAGTGTGTGGCTGTGCTGGGGTTCACCTCTCCTTTTCTGTTTTCAGTCCTAACACCTCAGTGCTGCAAGTCATGTTTGGTTTCTTTTTGCTGAGCTTTTCCCTGTGCTGCTCAGAGATGTGTGCCTGCAGGGTCCTCTTTCTTCACCCTGGGACAAAGCAGGAATTCCTTTGCACACAAAACCCTACCTTGCAGAGGTGACAGCCTGGCCTCGCTGCACGCTGGGTTGCTCTTTGTGTCAATGAAAGTCTCTTTTCCTCCCCAG
Seq C2 exon
CTTGTGCTGTTGCTGGTCTCTGGAACTGTGTTACCATCAACCCACTGAACATAGCAGCCGGAGTGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023558:ENSGALT00000039173:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PU(6.4=16.7)
A:
NA
C2:
PF102334=Cg6151-P=FE(22.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]