RnoINT0027625 @ rn6
Intron Retention
Gene
ENSRNOG00000005840 | Cacfd1
Description
calcium channel flower domain containing 1 [Source:RGD Symbol;Acc:1311501]
Coordinates
chr3:5557975-5561832:+
Coord C1 exon
chr3:5557975-5558821
Coord A exon
chr3:5558822-5561759
Coord C2 exon
chr3:5561760-5561832
Length
2938 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
CATTGTCTTTTGTTTTGAAGCCT
3' ss Score
7.33
Exon sequences
Seq C1 exon
ATCAGGGATATCCACGGTCTGAAGACTACAACATTTTGGGGGCAGCAGGTGCTCTACTGGGAGTCCGAAGGCAGTGAGGCTGAACTGGAGTTTAGCCATGGCTTCCTGGAGGCGCATGCCAGTTTCCAGGGCCAGTATTGGACCATCCCACCGAGGACACCGGAACAGGTCAACAGCGTGGCTCTGTCCTAGATTTCTCTCCAACGGCCAGCTGGAAAGAGAGGCAGCCCTACTCCGGAAAGGGTGACCATCCCCGGACTATGCAACTCTAGCCTCTTGAGAGGTTCAAATGCCTGCCAGCCGAAGGGAACCGCTTTTAGTGACCTTTTCCAGGTGCAGAAGGGCGGGGACTGGGAGTTGGAGATCAGAAAAGCAATCCCAGTCCTCAGGGCTAATAAAGGATACAGGAAACCAGACTGGAGTTTTCCTCCCATAACTTGCTGCCCACAGCAAGCCTGGCTTGAAAGCTTATTTTACTGAAAGGCGTGGTTCCCTGGAGGTCTGAACAGACCCTTTGCCACTTCTAGATGACCTCTTCCAATCTTGGGAAGAGAAAAGACCAGTCCAGACCCAGCGTACCTGTAAACACGCCCCTTCTCCGCCATTTCTCCCCGCCCCCGGCTATGGCCTGCGGGTCCGCCCCTATGCTAATCACCGCCTCTCCCACAAGGCCGCGCGCGGGTGGACACGTCCCTTTGTGCGCGCCCGGTGCTGCGCGCAGCGTTCAGCATGAGCGGCTCGGTCGCCGCCGGAGCGGCCGCCGGCCCAGTCCCGCCGGCGCAAGAGGAGGGCATGACATGGTGGTACCGGTGGCTGTGCCGCCTGGCGGGAGTGCTAGGGGCAGTGT
Seq A exon
GTGAGTATCGCGTCCGGGGAGCGGGCGTCCCCGGGGTTGCCATGGCTCCCGACCTCAGGCCTGCAGTCCGCCGCCTCGAAGGCTACAGCCAAGCTGTTCTGGCCTTGGCCAGAGGTGATGTGACTCACGGAGAATGCGCGTCTGCCCCTTCCCGGTCCCACCTCGGCCTGGTGATGCTCACCTGGGCTGCGGTGGGACTGACAAATTCCCAGCCTTTGAACAAAACTTGTTCATAAATGGGGGGCTGGGAAGTTTGCTTGAGGGTCAGATGGTGCCAGGAGGAGGGTGGCCCCTCAGGGTGGCTGGGCAGTGGGCAGAGAGGCAGCTTCTCCTCGGGTTCTTACTGTCTACACTCTCCTAATGCTTCTCGCCAGCCCGGTATCCTCCACACCAGCAAGCTTTCTCTGCTCAAGCTCCAAAAGAATAAACGAGGAAGGCAGGTCCGCCTCTTAAGTACAGCTGTGTTGCTGGCCTTCCAAACAAAACCTTTGAACCTAATGTGTTTGCTAAATCCTATGTATCCCTTTCATTGTAAATTCCTAGAAGTCCGGGTGAGTGCTGGTCTCAGGAAAGGAAGGTCCAGGACGCCACTGCCTATCTGGTACCGGAGCAGGGACTGTGTGGGTAGGGGCAGACCCATCTATTGTCCTGGAGTATCTTGGAGCCCCTTCTGTCCAGATGATCTTGCTGGTCAGATGGATAGGGTAGGGTTAGGTATGGGCTGCCCTGACAGGGCAGCTCCAGAGGGAGTCTGCCAAGGTTGATCAAACCCTCTCCAGTGCAGTTAGCTATTTCAGTGTGGTGTTAAGGGGTGCAGAAACAAGGAAGATCCTGACCGTGACCTGTAGGCGGCTACCCTCCCTCCATCTCGATGATTCACTGACCCTGGTGACTTCTAGATTAGATTGACTTTGGAAATCCCACCCAGTCCTGTGCTTCCTAACATGGGTGTCTGTGCTACTCCAGAAGGCCTCCCAACCCTCCCACTGGGACAAGCCATTGGTGAAACCTTAGGGGAGACCTGTGGCAATAACTTCAGTTTTCTCCTGAACCTGCAGATGGGGATGGGCGTGCATCAAGGTTTTGAACACTGGCATATCACAGGAAGGAAGGAAAATGTGTATTTTCTTTAAAAACTCAATAGGGGTTTGACAGGAGCTGTGGCCTATCCTCTCTTGGAATGAAAGCTATTCTAAGGGGTTTGCTTACTTATTGGAGGGATTTATTCTGGTCACAAAGGCCTCTGTACACAGCAGCTCTGAGGAGGAAAGAGTTGTATAGTGACATCTCCCTTTCGTGGAAGACACGAGCATTAGTTCCCCAAGTGGATAGATGGATTGAGTCCTTGGTTGTCAAAGGACTCCTGTTCGTCCCGGTTGTGACCTGGTCTTCCCAAAGCTGGCTCTGCTGAACAGCACAGTGGAGCAGCGCTGCAGGTGGGATGCTGATGACAGGGCTGCAGGCCCCTCGGGTGAGACCCAGCCTAGATCCACACAGGCAGAAGGTGGACAGCCCCTCACTTCTGTGGCCCTGGGAGCTTTGCTGCTGTCACGCTGTCACACGTGGATGAGTGCTGCTTTGAGTTCTTTACTAGAGAAGACTTTGTGACAGAAGTTGTGCCACTCAGAAGAGTAGGTCCTTGGGTCCATTCTCCTGCATCAGCTTCCATTTGCATAGTGTAACATGGGAATATGGAAAATGGTGGAATTCCAGGCCCAGTGGAGGGATCAGGTGACTTAGGCCTGCTGCAAGTTTAATAAGTTGGTGCTAATTGCAGCCTCAGAGGGCCAGCACTCTGCCCTCCCTTAGCTTGCCTCCTGCCAGGCTGGGCAGCTCCCAGGAGTGTCCTCAGAGGCTCGCAGAGTTCCTGGTGAGGGACTTCCTGGTGAAGCCTGGGTGGCTGCGGCAGACTGTAACCCCGAGGTACAGTCAGAGGGGAGGAGCCTCACTGGAGTCCCACCCTGGAGAGCAGTCACATTCTGGAGAGGAGCACACATCCCGTCCCCTCGCGGTGTCTTGCTGTTCTTGTGGTATTGGGACATAGCCTCCCTATGTGTAGGAGAGAAAAATGAGCTTAGAAAACTCACATACTCAGGGTCACATGGCTGATGTTTTCGATGTGGGATTGTCATTTGGATCTTACCTGGTGTACCGTGAGAGGCATCCCTGTCCTGACCCAAGTTCAGGGTGTGGCCAGACAGTGTGACATGCTCGCAATCCCAGTCCCCAGGAGGCCGAGGGAGCAAGACAGTGTTTGAGGTCAGCTTGAGCTATAGAGCAGGAGGACTCTGTCTCAAAGGAAAACAAAACAAAACACCCTTACTAAGAAGGCATAAAAAACAGAATAACCCCAAATAAATCTGAGTGTCGTTTTCCAAGTCAGAACACTACCTAGTAGATGCCGGTAGGCAGCCTTGCTAAGGCTCTCAGTGAAGTCGGGACAGGCCTGACTTTGTTTTTTTTAAGATTTATTTATTTTATATATGTGAACACACTGTCTTCAGACACACCAGAAGAGGGCATCGGAACCCGTCATAGTGGTTGTGACCCACATAAGTGGCTCCTGGAAATTGAACTCAGGCCTCTGGAAGAACAGTCAGTGCTCCTAACCTCTGACCCATCTCTCCGGCCTTCCCCCAGCCCCCAGGCCTGACTCCTTGAGAGGGTTTGATAATGACCTGGAACTAAGGGCTGGCCCATTGGAGCTTAGGTTTGAGAAGGGTGTGGCCTTTATATCCCCAGGTACGAGAATAGCTAGACTTGAGCTTCGGATGTAGATTTAGTACTCTCCACTGTTTGGGTGATGGTGGTTGCTGAGGGAAGCCCTAAGGCTGAGCATCTAAAGGGAGCCCCGTGTGTTCTCAGTGTCTGCCCCGACATCCTTCTGCGAGCTCTGCCGTGCTCTGCTAACTCCTGCCCATTGTCTTTTGTTTTGAAG
Seq C2 exon
CCTGTGCCATCTCTGGACTCTTCAACTGCGTCACGATCCACCCTCTGAACATCGCAGCTGGGGTGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005840:ENSRNOT00000007677:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PU(6.4=17.5)
A:
NA
C2:
PF102334=Cg6151-P=FE(21.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]