HsaINT0025519 @ hg19
Intron Retention
Gene
ENSG00000160325 | C9orf7
Description
calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:1365]
Coordinates
chr9:136325087-136328677:+
Coord C1 exon
chr9:136325087-136325309
Coord A exon
chr9:136325310-136328604
Coord C2 exon
chr9:136328605-136328677
Length
3295 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
CCCGTGTCTCTTGTTTCAAGCTT
3' ss Score
7.93
Exon sequences
Seq C1 exon
ATGCTAATATGCTCCCTCTCCCACAAGGCAGCGCGCCGGCTCGGACGCGGCCGGCTACCGAGCCCTTTGTGAGGGCTGTGAGCTGCGCCTGACGGTGGCACCATGAGCAGCTCAGGTGGGGCGCCCGGGGCGTCCGCCAGCTCTGCGCCGCCCGCGCAGGAAGAGGGCATGACGTGGTGGTACCGCTGGCTGTGTCGCCTGTCTGGGGTGCTGGGGGCAGTCT
Seq A exon
GTGAGTATCCAGTCGGGGAGAGGGGCCGGCCCCGCCGCGCATGCGCTCCTCGCCCTGCCCTGCCCCGCCCCGCCCCGGCGGCCCCAGGGGAAAGGACCCGCTGGGGGTCGGGGGTCTGCCGGGCGCCTCCCGGGGCGGAGGAATGGCGGGGCCGCCGGGAGCCGGCGTCCTGGGGTTGCCATGGTTACCCGCTCGGGCCTGGGCGCCTTGGTACCCCGGGCTGGGCTGGGCTGGCGCTTCTGGGAACATTCCCGGAGGGACCAGAAACCCCAGGGCGGGGGGGCGGCGGGGGCGGGGGTGGGGCACCGGCCTGGGGCACGTGACTGAGCCCTCCCCCCGCTCCCCAGGGGCTTTTGTGAGACTTTCTCGGTGATGCTCACGGGGCGCATGCCCACCTGGCCCGTACTAAAGCGTCAACTGTTGACTTGGGCGTAGGTGACGGCAGCCACATTGCTAACCTTTGGGCAAGGATTGTTTGTAAGGGAGGCGGGTGCACGGCTGGCTAGATTTCTGGCAGGAAGCCACTGGGCGGAAGTTTGCTGAGGGTCAGGTGGTGTCAGGGCACAGGTGGCCCCTGGGGCCGCGGGGCAGTGAGCTGAGGGCCCGGCCTCTCCCTGGGTCCTCTGTCCGCTCTCATATCTCCCCCGTTGCTGCTGCCTTAGCCGCCTGTCACCGGCCTTCCTCCCCTTCTCCGCACGCATCCCAGTCACAGACCCTGACCTTAGGCTGCCAGGGAAGCTAGGCTCTTAAGCACAGCCAGAAAAGGACAAAGAGGGAGGCAGGTCAGCTCCAGGAGTGAATGGAAGCCGTACAGCTGGCCTTCCAGGGAAAGACAAGTCTGTCTGAGTGATACCCTTTCCTTTCCTGTCTGCCCTCAATCTTGTGGATTACTGGAGTGGGCAAGGTCTTAGAGAATGTCTGTCGAGGATGTCTGCAGGTTTTAAACAGTGCCTGCCTGGCAGAGAGGGCTAGCTCTGGGCCTGGGCAGGGCAGGCCCCATCAGCAATCCTGCCAGAAGGACCACCTTTTCAGGGTCACCTTGGGTTCCACAGCCTTTCCAGGTGGGTAGAGGGTGGAGGGAGGTTGAGGCAGGAGGGTGCTGGGCTAGGAGTGTGCTGCCCTCGCTAGGCATGCCCTTATCCAGAGGCAACGGATACGGTAGGGCAGGCCCTACCCCCAAATCACAAAAAGGCCCCGAGTTTGTGTCACTGCTCTTCAGGGCAAGTACGCTTTTGACTTTGTAGGAGAGACTGGTGGGTTTGAAGTTAGGCATTGGATCCAGTCCTGTCATGTCTGGTTAGCTGTTTTCCCTGCAGATTAGGGTGGGCAGTGCAGTGGGGTGACATGGTCAGTGGTGAGAAAGGAAAGGTCCTGACTATGGCCTGTAGGCCACACCTCCTTCCTTCTTGGTCAGTGGCCCTGCCGACTCCCAGATTTGCTGTGGAGTCTTACTCAGTTCTGTGCCTCTCAAAGTGAGGTACCTCTGCCTTTCCTGGGAGTTCCTGGGGCTCTGTTGGGTCTACAGATGAAGCTTCAGGAGAAACTTGTGGCATTGCCCTGAGTTGTCAGTTGCATCTGCAGATTTTTGGGGGCATGGTTATGTGAACATCAAAATGCTGTATTACAGGGTAGAATGCAAAAATGCAGGGTGTTTTAGAGATGCGGCAGGAGTTCAGACAAGGGTTGTGTGCCGGGCTGGTCCTTGGGTAAGGTTTTCCTCCTCCAGGGTGAGGGGATCAGAGAGAGTACCTGGAGAGGGTCTACCCTGGGTCCTAAGAGCATCTGGAGGTGATACCTTGGGAGGGGACAGGATTGCATGGTGACAGCCCCCTCACGTGGAAGATATCAGCATTGAGGCCCCCAAGTGGACATCCTCCAGCCCTTTATTGCTAAAGGATTCCTGGCTGGAGCCTGCTGGTCTGGCTTGACACCTGGTCCTCCCCCAAGGCTGGCTGTGGGTTGGACAGCTGGGGTAGGGTTGGAGCTGGAGGCCAAATGCTGACTGCAGCAGGAAGCACAGCCGAGCTGTCAGGTGAGGCCAGGCACAGCAGAGAGGCAGGGAGCCGTGTCACCCTTTGGGCACTCTGCTAGGACAGGCAGGCCCCTGTGTACCTGTGGTTCTGGAACACCTTGCTGTCTGAAGGCAGATGTCTAAGGCTGTGCTGAGGAGCAGTGCAACGCTTGAGTCCTTTGTTTTAGAAGGAGACCCTGGGGGCCCATGAAGCAGTCCCATTGCAGTTCGGCTCACTTTATCTGGCTTCTTTGCCTGCTGTCTGCATAAGGTTACCTGGGAAAATGGAAAACAGCAGAATTCCAGACCCAGGTGGAGGGATCAGGTGCAGAGGAGCTGCTGCAAGTTTAATGAGCTGGGTGCTAATTGCTGCCTCCAAGGCCCCCCTCAGTGATGGCCTGGGCTTGCTCCCTGCCCAGCAGCCACCTCCTTGGACCTGCCTTGAAGGCTCCTGGAGTTCCTGGTGAAGCCAGGCTGCAGGCTGTGGGTGGAGGAGGGAGTTGGGTGCAAGAGACCCTGCTGGTGAGGTGCAGCTGGGAGGCGGGGCGTCAAGGCTGCACATCTGAGCATCAGAGAAGCCACGTTCTGGGGTGGAAAACGATGCCCCCTCCCCTTCCTGGCCTTATGGCATTTCAGCGGTGGGTGGCTGGGCTGTGGGACTTGCTCATGTGCAAGAGGAGAAACGGGTCTAGGAAGATGAAGATAGCGTGCCAGTGGCACAGGGCTGGTGAGGAAGTTAGAGCTGGAACTGCTGCTCAGTCTTACCTGGTTCCCATCTCTGTTCTGAGAGAGGCACCCCTTGTCCCAACCAAAATCCAAGCCACATTTTCTGAGTCAGAGGACTTCTTGTGTGGCCGGCCCTGTGAATGGTGGCAAGTGACCCTTACCGAAGGCTGAGTCTTGGGGGAGCACTGGCCTGAATCCTTGAGGGACATTCACTCTTTAATCCTTCTTTAATCCTAACCTCCCTTTGAGGTGGATATTGATGTAGCTGGGGTCAGAGGGCCAGCTCCTCTGAGCCCTGAAACGGGGAGAGGATGCTGTGAGATCCACCTGCCACCTTGCTGCCACCTTGCTGTGGGGCCTGGGGCAAGCAAGGCACTGCACCTCTCTGCGTCTCCTCACCTGTCTCAGACGATAGAGGGCAGGCTTCTGGGTGCTGTGAGAACTGTGTGCTGAGCATCCGCAGAGACTCTCGTCCTTTCCAGTCATCTCCCAAGGCCGCCTTCCCAGCGGGCTCCGCCTGCCTCCCTGCTGACTCCTGCCCGTGTCTCTTGTTTCAAG
Seq C2 exon
CTTGCGCGATCTCTGGCCTCTTCAACTGCATCACCATCCACCCTCTGAACATTGCGGCCGGCGTGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160325-C9orf7:NM_017586:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PU(20.6=17.1)
A:
NA
C2:
PF102334=Cg6151-P=FE(70.6=100),PF102334=Cg6151-P=PU(7.5=12.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)