GgaINT1007888 @ galGal4
Intron Retention
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:48554-49187:-
Coord C1 exon
chr16:49071-49187
Coord A exon
chr16:48720-49070
Coord C2 exon
chr16:48554-48719
Length
351 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
3' ss Seq
TCCATGTCCCACTGCCACAGGAC
3' ss Score
8.21
Exon sequences
Seq C1 exon
GGTGGTGTGGCAGACCCCGGCCCGGAGGCCACCGTGTCGCTGACGGCCTTCGTGGTGGTGGCCCTCCATGGTGCCCGCGCTCTGCTGCCCCCGGACAGCCCTGAGCTGCCCCTCCTG
Seq A exon
GTGCGTCCCATGTCCCCACCCCTGTGTCTTGGTCCTCATATCCATGTGTCCCTTGTGCCCCATCCCCCAAATCCCCACATCCCCCATATGTTCCCATACCCTGCTGTGTCCCCCCAGTGTTCCCCCGTCTTTCATTCTCCACTATCCCCCATATTCCCATATGTCCCCCTGTCCCCCAGTGTCCCCTCATCCCTCTGTGTCCCCCTGTCCCCCAGTGTCCCCCACGTCCCTGTATGTCCCCATGTCTCCTAGTGTCCCCCATGTCTGTGTCCTCCAGTATCCCCCATGCCTCCCCGTGTCTCTTCATGCCCCACACTCCATGTCCCCACACTCCATGTCCCACTGCCACAG
Seq C2 exon
GACAAATCCCTGTCCCGGGCCTCCACGTTCCTCCGGGGCCGCGTGGAGCAGTTGGGGACCTATGGGACAGCCATCACATCCTATGCATTGGCACTGGTGGACACCGCTCCTCCGGGGCCGCATCCGGCGGTGGAACGTCTGCGGGGCATGGCCCGGAGCGCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646:ENSGALT00000044830:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(15.6=100)
A:
NA
C2:
PF076789=A2M_comp=FE(22.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTGTGGCAGACCCC
R:
CATGCCCCGCAGACGTTC
Band lengths:
267-618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]