BtaINT0001406 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MP09]
Coordinates
chr23:27160277-27160644:+
Coord C1 exon
chr23:27160277-27160390
Coord A exon
chr23:27160391-27160472
Coord C2 exon
chr23:27160473-27160644
Length
82 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
TCTCCCCCAACTTTCTCCAGGAA
3' ss Score
9.79
Exon sequences
Seq C1 exon
GGAGGCTTAGTGGGAAGCGATGAGACTGTGGCGCTCACGGCTCTTGTGGTCATTGCCCTTCACCACAGGCTGGCGGTCCTCCCAGACAAGCATTCTGAGCACTTGAGTAGAGTG
Seq A exon
GTAAGGCAGCTATGTGTCTGCCCTTCGCTGATCCCTTTCCTCTCAGAAGCCCAGTCCACAGATCTCCCCCAACTTTCTCCAG
Seq C2 exon
GAAAATTCCTTCTCAAGAGTAAACACCTTCTTGGGTGCGAAAGTAACCTCTGGGCTCCTGGGCTCCCACGCCTCCGCCATCACGGCCTATACCCTGTTGCTGACCGAGGCCCTCGAGGACCTGCGGAGAGTTGCCCACAACAACCTCATGGCCATGGCCAAGGACATCGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006864:ENSBTAT00000045468:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(19.2=100)
A:
NA
C2:
PF076789=A2M_comp=FE(29.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGAAGCGATGAGACTGT
R:
CCAGGAGCCCAGAGGTTACTT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]