BtaEX0000271 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MP09]
Coordinates
chr23:27160020-27160644:+
Coord C1 exon
chr23:27160020-27160176
Coord A exon
chr23:27160277-27160390
Coord C2 exon
chr23:27160473-27160644
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCCCACTTCAACCAGGGA
3' ss Score
7.55
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GCTCACGGCCTTTGTGCTGAAGATACTGAGTTTGGCCCAGGATCAGGTGGGCGGCTCTGCTAAAAAGCTGCAGGAGACGGCCACGTGGCTGCTGTCGCAGCAACGGGATGATGGCTCATTCCATGACCCCTGTCCTGTTATCCACAGGGAAATGCAG
Seq A exon
GGAGGCTTAGTGGGAAGCGATGAGACTGTGGCGCTCACGGCTCTTGTGGTCATTGCCCTTCACCACAGGCTGGCGGTCCTCCCAGACAAGCATTCTGAGCACTTGAGTAGAGTG
Seq C2 exon
GAAAATTCCTTCTCAAGAGTAAACACCTTCTTGGGTGCGAAAGTAACCTCTGGGCTCCTGGGCTCCCACGCCTCCGCCATCACGGCCTATACCCTGTTGCTGACCGAGGCCCTCGAGGACCTGCGGAGAGTTGCCCACAACAACCTCATGGCCATGGCCAAGGACATCGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006864_MULTIEX1-34/47=33-35
Average complexity
S
Mappability confidence:
75%=88=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PU(2.6=83.3)
A:
PF076789=A2M_comp=FE(19.2=100)
C2:
PF076789=A2M_comp=FE(29.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGCCTTTGTGCTGAAGAT
R:
ACAGGGTATAGGCCGTGATGG
Band lengths:
251-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development