GgaEX1012080 @ galGal4
Exon Skipping
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:48554-49470:-
Coord C1 exon
chr16:49314-49470
Coord A exon
chr16:49071-49187
Coord C2 exon
chr16:48554-48719
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACGTGTCCCCGTGTCCCCAGGGT
3' ss Score
10.31
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
GCTGACGGCGCTGGTGCTGCGTGTGCTGGCCCTGTCCCGGCCCTATTTGCCAGTGGCTGCCAGCGGCCCCGCTGCGTCCCTGCGGTGGGTGCTGGGGCAGCAGCGCCCAGATGGCGCCTTCTTGGAGCACAGGGCTGTGGTGCACCGTGAGATGCAG
Seq A exon
GGTGGTGTGGCAGACCCCGGCCCGGAGGCCACCGTGTCGCTGACGGCCTTCGTGGTGGTGGCCCTCCATGGTGCCCGCGCTCTGCTGCCCCCGGACAGCCCTGAGCTGCCCCTCCTG
Seq C2 exon
GACAAATCCCTGTCCCGGGCCTCCACGTTCCTCCGGGGCCGCGTGGAGCAGTTGGGGACCTATGGGACAGCCATCACATCCTATGCATTGGCACTGGTGGACACCGCTCCTCCGGGGCCGCATCCGGCGGTGGAACGTCTGCGGGGCATGGCCCGGAGCGCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646-'33-43,'33-42,34-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.179 C2=0.179
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(21.4=100)
A:
PF076789=A2M_comp=FE(15.6=100)
C2:
PF076789=A2M_comp=FE(22.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCTGCGTGTGCTG
R:
TGTCCACCAGTGCCAATGC
Band lengths:
250-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]