MmuEX6077206 @ mm9
Exon Skipping
Gene
ENSMUSG00000073418 | C4b
Description
complement component 4B (Chido blood group) [Source:MGI Symbol;Acc:MGI:88228]
Coordinates
chr17:34870345-34870973:-
Coord C1 exon
chr17:34870817-34870973
Coord A exon
chr17:34870605-34870721
Coord C2 exon
chr17:34870345-34870516
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTCTCCTCACTAGGGG
3' ss Score
10.84
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GCTGACTGCCTTCGTGCTGAAGATTCTGAGTTTGGCCCAGGAACAGGTGGGCAACTCCCCGGAGAAGCTGCAGGAGACGGCTAGCTGGCTGCTGGCCCAGCAGCTGGGTGATGGCTCCTTCCACGACCCATGTCCAGTCATCCACAGAGCAATGCAG
Seq A exon
GGGGGCTTGGTGGGGTCTGACGAGACAGTGGCACTGACCGCCTTTGTGGTCATTGCCCTTCACCATGGGTTGGACGTCTTCCAGGATGACGATGCGAAGCAGCTGAAGAACAGAGTG
Seq C2 exon
GAAGCCTCCATCACCAAGGCAAACTCATTCTTGGGGCAGAAGGCAAGTGCTGGGCTCCTGGGTGCCCATGCCGCCGCCATCACAGCCTATGCCCTTACGCTGACCAAGGCCTCGGAGGACCTGCGGAATGTTGCCCACAACAGCCTGATGGCCATGGCTGAGGAAACAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073418-'27-27,'27-26,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.017
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(19.5=100)
A:
PF076789=A2M_comp=FE(14.2=100)
C2:
PF076789=A2M_comp=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAGTTTGGCCCAGGAAC
R:
CTTGGTCAGCGTAAGGGCATA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: