DreEX6040201 @ danRer10
Exon Skipping
Gene
ENSDARG00000038424 | si:dkey-8k3.2
Description
si:dkey-8k3.2 [Source:ZFIN;Acc:ZDB-GENE-100922-98]
Coordinates
chr16:16765232-16767178:-
Coord C1 exon
chr16:16766986-16767178
Coord A exon
chr16:16766772-16766873
Coord C2 exon
chr16:16765232-16765394
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTCAGTGTTTCTGTTGTAGGGA
3' ss Score
7.72
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTTGACTGCACTAGTAGTGAAAGTATTGTCTCTTGTGGCTGAACGACAAATAGAGACTCGTCAACAACATGGAACAACAGAAAGGATGATTTCACAGGAGGACATCCGTCAAGCAGTTACATATTTGATTAAGACACAGAGATCAGATGGGTCCTTTACTGATGCTCATCCAGTCTATCACAGAGAAATGCAG
Seq A exon
GGAGGAATTGGAGGAGTTGAGCAAGATGCTTCTTTAACAGCTTTCATCACAATAGCTCTCTGTCGCTCTATGCCTTTCTTGGACCAAGAAGCAACTGCTGTG
Seq C2 exon
AGCCAAAGCATCGCTCGTGCCACCAACTTCCTGCTAAAACGGGTTGATAATCTTAAAAGGCCTTATGCATTAGCCATTACAGCATACTGTTTGTCTACCTGCCTCACTGAACGAACCCAAGCACTGTCAGCCTGGAAGAAACTCCAAAGTCTCGGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038424-'34-27,'34-26,35-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(24.2=100)
A:
PF076789=A2M_comp=FE(12.8=100)
C2:
PF076789=A2M_comp=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACATCCGTCAAGCAGTT
R:
TGGAGTTTCTTCCAGGCTGAC
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]