GgaINT1007999 @ galGal4
Intron Retention
Gene
ENSGALG00000024004 | C8G
Description
complement component 8, gamma polypeptide [Source:HGNC Symbol;Acc:HGNC:1354]
Coordinates
chr17:513115-513767:-
Coord C1 exon
chr17:513729-513767
Coord A exon
chr17:513373-513728
Coord C2 exon
chr17:513115-513372
Length
356 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CACCTCTCCTTCCTTTCCAGAAA
3' ss Score
10.82
Exon sequences
Seq C1 exon
GGTTCTGCGACTCTGCCGACGATTTCCACATCCTCGATG
Seq A exon
GTGAGCATGGCCCCACGCTGCCACGGCCCTGCCCTGCAATGCTGGCCCAGCACAGGGCGGGTGTCCCTCCGTGCCCCGGTGTGGGGCTGGGAGGTGGCAGAGCATCACTCAGCACGGCTATCGGCCTCACGTTGGCAAAGGAAAGCCCTGTTTGGCCCCTGTGTGGGTCCAGCTGGGCTTAGCGGTGTCTGTACTGGGATGAGGGTCTGGGGTGGGGTGTCCTGGGATGGAGACAACATGGGTGTTCCCGGAGGTGGCTCCACCATTTGGTGGTGGTGCCTGGGGAGGCAGAGGTGAGTCCCAACCCTGGCACTGGGCTCTGCCCCAACCCCTCAGCACCTCTCCTTCCTTTCCAG
Seq C2 exon
AAACGGAGCTGTAGATGGAGGCAGTATTTCCAGGATGTGCCCAGCGCACCTCGTGCAGCTGCCCATGGACAAGACCACACAGGGATGAGCTGGGGCCTGGCCAGACCGTGCTACTGCTCTGCTGTGCTGGAGCACACCCTGGGCTCCCCTGTTCCTCCAGGCTGGCTGTGTCACCCCATGGCTTCATGCCCTTTGCCCCACGTCCTGTAGCAACCAGCAGCATCCCAATAAACATGAGGAAAAGCTCTGTGTCTAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024004:ENSGALT00000040479:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGCGACTCTGCCGAC
R:
GCCTAGACACAGAGCTTTTCCT
Band lengths:
296-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]