RnoINT0027503 @ rn6
Intron Retention
Gene
ENSRNOG00000028701 | C8g
Description
complement C8 gamma chain [Source:RGD Symbol;Acc:1309074]
Coordinates
chr3:2724616-2724913:-
Coord C1 exon
chr3:2724875-2724913
Coord A exon
chr3:2724790-2724874
Coord C2 exon
chr3:2724616-2724789
Length
85 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
AAGGTTTTTGTCCTCTGCAGAGA
3' ss Score
8.63
Exon sequences
Seq C1 exon
GTTTCTGTGAGACTGCAGACCAATTCCACATCCTGAATG
Seq A exon
GTGAGTGTCAGCAGGGCAGAGCAGTAGGGTGGAGGGGGTGAGGTCAGGTCGTTCCTGCCCTTGCTAAGGTTTTTGTCCTCTGCAG
Seq C2 exon
AGATGCCGAAGTGAAATGAGGCCATCTAGTAGAGAAGCTATGGACTCCCCTCAGAGAGTTCTGAGCATCCTGAATACAATCTTGGAGTCTTTCCTGTCTCTCCCCAGAAGCACCCCTTCATACGGCTCTGTTGTCCTGAGACTTTTCAGTAAACATCAGACTTGGCCTTGGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028701:ENSRNOT00000061904:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGACCAATTCCACATCC
R:
TCTCAGGACAACAGAGCCGTA
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]