HsaINT0025100 @ hg19
Intron Retention
Gene
ENSG00000176919 | C8G
Description
complement component 8, gamma polypeptide [Source:HGNC Symbol;Acc:1354]
Coordinates
chr9:139841103-139841426:+
Coord C1 exon
chr9:139841103-139841141
Coord A exon
chr9:139841142-139841219
Coord C2 exon
chr9:139841220-139841426
Length
78 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GAGTCTCGTCTCTGCTGCAGAAG
3' ss Score
5.62
Exon sequences
Seq C1 exon
GCTTCTGCGAGGCTGCAGACCAGTTCCACGTCCTGGACG
Seq A exon
GTGAGTGCACAGCGGGGCAAGCATGGCGGCGTGGTGAGGGGGGCCACTGCCACCGGCTGAGTCTCGTCTCTGCTGCAG
Seq C2 exon
AAGTGAGGAGGTGAGGCCGGCACACAGCTCCAGTGCTGAGAAGTCAGTGCCCCGAGAGACGACCCCACCAGTGGGGTGCCCGCTGCCTGTCCTCCGTGAAACCAGCCTCAGATCAGGGCCCTGCCACCCAGGGCAGGGGATCTTCTGCCGGCTGCCCCAGAGGACAGTGGGTGGAGTGGTACCTACTTATTAAATGTCTCAGACCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176919-C8G:NM_000606:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGACCAGTTCCACGTC
R:
CAGAAGATCCCCTGCCCTGG
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)