GgaINT1008474 @ galGal4
Intron Retention
Gene
ENSGALG00000004604 | CCBL1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr17:5286154-5286511:-
Coord C1 exon
chr17:5286422-5286511
Coord A exon
chr17:5286341-5286421
Coord C2 exon
chr17:5286154-5286340
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGCTTCCTCTCCCTTCACAGGAT
3' ss Score
12.07
Exon sequences
Seq C1 exon
GTGGGTTGGACTGTGGGACCCAACCGGCTGCTGCAGCACCTGCGTACCGTGCACCAGAACTCGGTGTACCACTGTGCTACAGCTGCACAG
Seq A exon
GTAAGGCAGCTCCCTGCAGCCAGCCCCACAGCCCCCGAACCAGCCTTGGCCATCTTCCCACTGCTTCCTCTCCCTTCACAG
Seq C2 exon
GATGCTGTGGCTAAAGGTTTCCAGAGGGAGCTTGAGCACTATGGGAAACCAGACAGCTATTTTGTCCAACTGCCCAGGGAGCTGCAGCAGAAGAGAGACCAGCTGGTCCAGAGCTTGGTTGCAGTGGGGATGAAACCCATCATCCCTGAGGGCACCTACTTCTTGGTGGCGGACATCTCTGAGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604:ENSGALT00000007326:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(7.5=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGGTGTACCACTGTGCTA
R:
GTTTCATCCCCACTGCAACCA
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]