DreINT0042118 @ danRer10
Intron Retention
Gene
ENSDARG00000023645 | ccbl1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:ZFIN;Acc:ZDB-GENE-040426-2676]
Coordinates
chr5:32668838-32669203:-
Coord C1 exon
chr5:32669114-32669203
Coord A exon
chr5:32669025-32669113
Coord C2 exon
chr5:32668838-32669024
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TATCTCTTATTGATCTTTAGGAA
3' ss Score
9.35
Exon sequences
Seq C1 exon
GTGGGTTGGGCAATAGGATCAGGGCATATCATGAAGCACTTGAAAACCGTCCATCAGAACTCAGTGTATCACTGTGCCACAGCTGCCCAG
Seq A exon
GTAAAACTGTGCTTATTTGTTTTAAGGGTAATGTTTGTAATGTTTTTATTATTTGCAGTGAACTGACATTATCTCTTATTGATCTTTAG
Seq C2 exon
GAAGCCATATCAGTGGGTTTTCAGCGAGAATATGATGTATTTGGGACAGAGGACAGCTATTTTCACCAGTTACCTATCACTCTTCATGAAAAGAGAAAAAGGCTGGCAGATTGTCTGAAGAGCGTTGGTCTGAAACCCATTCTGCCCCAGGGTGGATACTTCATGATTGCAGATATATCCAATATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023645:ENSDART00000004797:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(7.5=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCACTTGAAAACCGTCCA
R:
CGCTCTTCAGACAATCTGCCA
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]