RnoINT0081189 @ rn6
Intron Retention
Gene
ENSRNOG00000043426 | Kyat3
Description
kynurenine aminotransferase 3 [Source:RGD Symbol;Acc:1359262]
Coordinates
chr2:248676145-248680123:+
Coord C1 exon
chr2:248676145-248676271
Coord A exon
chr2:248676272-248679936
Coord C2 exon
chr2:248679937-248680123
Length
3665 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CACCCCTTTTGAACATGCAGGCA
3' ss Score
6.66
Exon sequences
Seq C1 exon
ATTATTTGAAATCTGCTTTTGTGTTTTCCCTTCCCAGCTCGGCTGGAGCATTGGCCCTGGTCACCTGATAAAACATTTGCGGACTGTTCAGCAAAACAGTGTATACACGTGTGCAACTCCTTTACAG
Seq A exon
GTGGGTGTTAGCCTTTACACATGCAGGGACTGGATAGCCTCCTCACGAGTAAACCCTTCTAATGCACTTTGGGAATTTTGGAGCAGACGAGTAGCCTATGGGCAATCCCTCATTTCAGGCTGCATAATTTATTTCACATTCACAAAGCTCCCCTTACCACACGGGATAATGTATTTTAAGAGACAGACAACTCTGATGCAATATTTAAAAGAAAAGAGAGATTGCCTGTTCATGGTGATGCGTGCCTGTCATCCTAGCTCTTGAGGCTTCAATCGGGAGAATCGTGAGTTCAAGGCTAGTCTGAGCCACACAGAGACTGAAGCATGGCTGGACAGCATACCAAGACACCGTGGAAAGCAGACAGAGGACAGACAGTATAACTATTCAGGAAGATTTCCAGAATACATTGTGAAAGTTTTTAAAAGAGCAAAATACATGGCAGTATGTATTTGTACTAATTTATACTATGTTTTGTGTAAGAAAAGTAGGACACCTCATTAGATGATCCAGAAGAAACTAGCTAACTGCTGCCTGTGTGGGTAGAACTAGCTGACAGGAAGGAGACAGCAGACCCTTTCTACCCAGTTAATCTTTTTCTCTAGCACAATGCTATGGGAGCATAGGCAAGTACCACTATGTCTGGTCCTTAATGTATGGCTTTGTTACACTGTTGCTATTTTTGTATACATTTCTAGAAACATCTATTTATCATCCTTCTCTGAATACCCCAAATAAACTAAAACAGTGTTCTACTTCTAGGAGTCAGGGAAAACACAAGAGAGTAAAAGTATTGGCTACATGGAACCTGATTGAATGTTTCTCATCCAAGAAACATTCTGTCTACCTAATGGGAAAAATTTCCATTATTTTTAGTGATTCTCCTACCTGACTATGATAAAGCCTAGTTCTGAAGGTTGGCTTTATTATATTTTACGTTCATTTTATCACCTCAAAATAAAGACAGTCACTTATTCAACTAAGATTCACTGGAAATTAGAGATTTTACAGACAAAACACCACTGCATTCACATACCTTAATATCAAGTTGAGAGACATAAATGATGGAGAGTCTTTTAAATGATAATATGTTAGACTTGACAGACGCAAAGTAAAGGTTGGAAGGAGGGAAGATAGGACCCAGGTTGGAGAGGACATGATGTCATATTGGACTAGCCCCATGGAGAAGGAAACGTCTGAGTGCTGGTTAACCTAGAGCAGAGCCCTGTGAGCAGAGAGAATACAAGTGCACCAGCCCAGTGGTAGACAGCACAGCTGCTCTGGGACATGGGGAGCTATTGGCAGTCTTAAATGTGTTATCAAAAGGAGTCTGGGGCTCTGTCGAGAGAGCAGGTAAGAGAAGCGTTACAGGAGAGAAGTATCAGTGGATTGAACCTAGCTGATGATTGTAGGACTGAGGGGTCCCTGGACGCAGTTGGAAGATTAAGTCAGTGGTGCCTTCCACTGGGCAGTGCACACATGCCTGGGCAAAAGAGGGAGTCCGGGTACACTTAGCACACAGACGTCTGTGTCTTTGTGCTTTGGATTTTCCAGGGCAAGGACTTCTAGAGTGAATGAAGGAATTGCTCAGAAAGGTAGAGCTGAACTTCTATAGCATTTCCTGAAGCATCTGATTCTGCATTTCAGAAAAATGCCCTCAGGCTGCTGTGTTTGGAAAATGGATGCTGACCTCTTAGTATTCTGTCTCATTGCTAAATCCTCCTGCCACAAAGACTTCTGTGTGATCTCCGCCCCTCCCACCTCATCATACTCTGCTTTTGCTACAGATCTCTCGTAATAACAGATTTGTTTCCTGGCCTTTCCACCTCACCTCCTCACCCACCCTTGAGTATGCACCAATTATGAAAGCCAGGGCTGTGCCTATGTTGTTAACCATTCTGTCCCCAATCCTTACCCAAATACCAGAAACCATCAGACACACTTTGCCTGCCAAGTATCTCGCCCTCTCCTTGGCAGATCTGTGTTCTTTATGCCCACTCTGACAGATCTCTCGTAATAACAGATTTGTTTCCTGGCCTTTCCACCTCACCTCCTCACCCACCCTTGAGTATGCACCAATTATGAAAGCCAGGGCTGTGCCTATGTTGTTAACCATTCTGTCCCCAATCCTTACCCAAATACCAGAAACCATCAGACACACTTTGCCTGCCAAGTATCTCGCCCTCTCCTTGGCAGATCTGTGTTCTTTATGCCCACTCTGACTGTAATTTGTTCTTATCATCCTGACTCTGCCATGGTTCTCAAGTCATGTGCCTGATCCTTACGACTTAGTCTGTGAAAGTTGTTGTAAAAGAATACTAGAAGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAATGTTGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAATACTAGAGATTGGGTAGCTTATACAGAAAAGGAATTTAGGGGCTAGAGCAATGACTCAGAGGTTAAGAGCACTGACTCCTCTTCCAGAGGTCCTGAGTTTGATTCCTAGCAACTCCATGATACCCTCTCCTGGCATGCAAGTGTGCATGCAGATAGAGCACTCATACACATACATAAATAAATAAATAAATAAATAAATAAATATCGAAAGAAAGATAGAAAAGGAATTTATTTCTCATGGTTCTGAAAGCTGGGGAGAGTCAGACCCTGACCCTGCCAGAAGCCATGTCAGATAAGGACCTGCTACCTCACAGGAGTCTCCTTTTTGTTGTGTTTTCCCATGATGGCACTGGGTCTGGTACCACTCCTGGGGCCTAATCACCCAGCAAAGGAATTGGAAGTAATGCCTACAGCTTGGAAACCAAGAATTCACCGAACGGAAGGAAGGGAACGTGAACACTAAGTCCTTTTCTCTTTATAATCTGCTTTTCATTGGTCACATTCTTCTTTGTCACCACTGCTGGAGGAGTGGCCCACAGGTCCCAGAGACCTGTCTCTCGATACTTTTACCTCCTGGGATCAGAACGGTTTCAGTATTTCTTCCGAGGAATGGGGCACTTGAGTTTGCTTGTCTACACAGCACACTGGCTTTAATTTCCTCCTGTGCCTTTGTCCTCTGTACCAGGAAAGACTGATTCCCTCTTCACCTGTCTGGCCATTCTTAGACTGAAACTCAGTAAGCTGGACCACAGCTTGCCTCATTAGAAAACGATTCATGTCTTTCTGTTACCAAGTATGCCATCTTTACATAATACCTCTTCTTCCGTTGGGATTTTCTGCCTTCCTCTGTTTGTCATATTAGATTTAAATGTTTACACACACACACACACACACACACACACACACACACACACATACATACACACACATACACACACACACAAACACACACACACAAACACACACACACACACACACACACACACACACACACACACACACAACCTCCTTCCTCCATTAACCTGTGGAGCTGAATAATTCACAGGAAACTGGCTGTAATTTACTGAACAACGTCTTGACACAAACTTAGTGTGATGATCTTTATTCTACCAGTGAATTAAGCCATAACTGACACCCCTTTTGAACATGCAG
Seq C2 exon
GCAGCCTTGGCCGAGGCTTTTTGGATCGATATCAAGCGCATGGATGACCCAGAGTGTTACTTCAATTCTCTGCCAAAGGAATTAGAAGTTAAGAGAGATCGGATGGCCTGTTTACTTAACAGCGTTGGCCTGAAACCCATCATCCCTGACGGGGGCTACTTCATCATTGCCGATGTGTCTTCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043426:ENSRNOT00000067165:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(19.5=72.1)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(39.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]