HsaINT0028675 @ hg38
Intron Retention
Gene
ENSG00000137944 | KYAT3
Description
kynurenine aminotransferase 3 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr1:88949091-88953152:-
Coord C1 exon
chr1:88953063-88953152
Coord A exon
chr1:88949278-88953062
Coord C2 exon
chr1:88949091-88949277
Length
3785 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTTGATTCTTAACAAACAGGAA
3' ss Score
7.18
Exon sequences
Seq C1 exon
CTTGGCTGGTCCATTGGTCCAAATCATTTGATAAAACATTTACAGACAGTTCAACAAAACACGATTTATACTTGTGCAACTCCTTTACAG
Seq A exon
GTAAGTGTTATAGTAACTCAGGGTAGAAGCATTGTCTTTTGGTGAAGGTATTACTTTTATATTGCATATTTGAATTGACTTAATTCTCCTTCTATCCTTCTGTTGCAGGGCCTTCTAATATAATTTGGAATTTGGGGAGCAGATACATATTCACTGTTATCAAGCATGGTTTGGGTTTTTTTTTAAACACAATTTTAGCTGTGTTAAACATTGCTGGCAGGAATCTAAAGTGCTACAAATTCTGTGAAGGACAATGGCAACACCAAACAAAATTACACATGTGTTTGCCCCATGAAAGCAATCCATCTTCTAAGAATTTACCCTAAAGTTGTGTTTTAGTCCGTTCTTGCACTTAGGTAAAGAAATACCTGAGACTTAGTAATTTATAAAGAAAAGAGGTTTACTTGGCTCATGGTTCTACAGGCTGTACAGAAAGCATAGTGGCTTCTGCTTCTGGAGAGGCCTTAGAAAACTTACAATAATGGTGGAAGGCAAAGAGGGAGTAGGCATGTCTCACAGGGCTGGAGCAGGAGGGAGAGAAGTGGGGAGGTGCAACACACTTTTAAACAACCGTATCTCACAATAACTCACTCTCATGAGAACAGCATCAAGGGGATGGTGCTAAACCATTCATGAGAAACCACTCCCATGATCCAATCACCTCCCACCAGGCCCCACCTCCAACATTGAGGATTACAACTGGACACTAGATTTGGATGAAGACACAGATCCAAACCATATCAAGCTATCTGCACATGTAAGAAGTTACGTACTTACCTGGCTATTCATTGCAGATGATTGAGGAGAATCCATTATCATCTACAGACGATTGATTACATAAACCATGATCTATCCAAACATTGAAATGTTATATGACCATATTAAGTTTCCTACTGGTGCTATAACAAATTACCACAAACTTAGTGACTTAAAACAACACAAATTTATTATCCTACGGTTCTTCAGCTCAGAAGTCAGAAATGGGTCTTAAAGGGCTAAAATCAAGGTGCTGGCATTGCTGTGTTCCTTCTGAAGGCTCTAGGAGAGTCTGTCCTCTGCTTCCGTCAACACATTTCCTGTGGCTTCAACCCTCCTGCCTCCCTTTTTCCCTTATAAGCACCTTTGAGATAACATTGGGCCCAATGGATAATCTGTCCAATTAATTAAGGATAATCTCCTTAATTTCAATCACATCTGCAAAGTTCCTTTCACCATGCAAGGTAACATATTTACAAGTTCTGGGTTTTAAGACCTAGAAGTCATTGGGACCCATTACTCTGTCTACTGGCTGCTAAAGAGAAAAGAAACAAGAAAGAAAATAGGGAAATACTATAATTACTGTACTGAGATAAAAAAGATTTCTAGAATACATCATAAAGTAAAAAAGAAAAACTATTTAAATATTATTTAATATTTAATATTTTTAATATATATTATGGAAATAGGGATTTAGTTACCATCATTCTATGGATAATCAAAATGCTGAAAAAAATAGTATTTTTCTAGAAGGCAGTTAAAAGGGCAAAAGAACCAGGCACAATGGCTCACGCCTATAATCCCAACACTTTGGGAGGCCAAGGTGAGCGGATCACCTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCTGTCTCTACTAAAAGTACAAAAATTAGCTGGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCCTGAATCCAGGAGACAGAGGTTGCAGTGAGCTGAGATCGTGTCACTACACTCCAGCCTGGGCAACAACAGCAAGACTTCGTCTCAAAAAAAAAAAAGAAAAGAAAGAAAAAAAAGATGTTGATAGATATGAAGAAGAAAGATAAAATAGGGAAGAGGAAGGATATAAAGCTCCAGGTGGGAGATATACAGTGTTAAATAGGGTAATCTTTGAAAGCCTCCCTGATAAGGTAACATTTGAACAACTAACTGAAGGGGATTAAGCAGCCACATGGTTACCTAGAGAAAAACCCCTTTGGACAGAGAGAACAAGCGGAAAGGCCCAGTGGTAGACAGCCTGGCTGGCATGTTAATATCAGAGAACAGCACAGAGACTGGAATGGAATGATTGAGAGAAGAGTAGGAAAAGCTAAGATCAGAGAGGTAGCTGGGAGTCCAATGGAGCTGGGGCATGCATGTCACTGTAAGGACTGAGTGAGATAGGAAGTCACTAGAGAGTTTTGAACTCAGGAGTGACTTGGTCTGGCTTGTGTTAGCAAATGGACTCTGACTGCCTCATTGAGTGAGAAAGCTGTTACAGTGATCCAAGAGAGAAATGCCAGTGCATTGAACAAAGATGGGGGTGGTAGAAGCAGTAAAAAGTGATTGGACTCTGAATATATTTTGAAAGTAGAGCCAACATTATTTGTCAATAGGTTACATATGGGATATGTGAAAAAGAAAGGAGTCCAGGATAATGCTGTAGTTAGGATGGATGTTTATGTCTCCTTATACTTGGAATTTTCTAAGGCAGTATCTCCTATAGTAAATGAACAAGTTGCCAAGAGAAAAAAAAAAAAAGATATAGCTAAGAATGCAGAACATCTTTTTCTGAACACTCTTATTCTCCATTTCAGCTAGGTGCTCTGTTTTGTCCTGGGACAACCATGTTTGGTTCCAGGAAACCACAGATTTCCAGGCTAAGGCAATCGATCCTTATTTTCCAAGATTTTGTAGTACTGGAGATTTATTACTAATTCTGTTTTACTGCATTCTTTTGGCATAAAATCTCTGTGATCTTGCCCCTCTCTGTCTCCAGTCTCATCTCTTGCCACACAGTCTCTCTTACCTGCCTGGTCCTTAATGTCTTAGTTGGACTGGGTGGCTTATAAACAACAGAAATTTATTTCTCACTGTTCTGGAGGCAGCAAAGTCCAAGATAAGGCACCAGCAGATTTGGTGTCTGGTGGGGACATGCTTCTTCACGGATGGTGCCTTTTGCTGTGTCCTTACATGGTGGAAGGAGCAAGCTAACCCTCCTTTGTAAGGGCACTAATCCTGTTCCTGAGGGCTCTACCCTTCTGTCCTAATCACTTCCTAAAGGCCCCACCTCCTAATACCATCACCTTGGGGTTTACTATTTTAATATATGAATATGAGAGTGGGCACAAACATTCAGTCCACTATACTTAACAACATTGGCTTTTTCCTTGGCCCAGTTTGCTGTCCTGGCTCTTGAAGAAAGATAGAGGAATTACTGTAGATGTTCCAGAAACTCATTTCTAGTCCCTCTTACACTTTGACCAACTTCCTGGCATATGAATAATTCCAGCAAGGATTTCCACACCTATGGAGAATAAGAAAGGCACATTTCTCCTTTGCACAGTAGGTGAGCTTTCATTTCCACTCTGTCCCCAAATGTAATGGTGAGAGGCTGACTACTCTCTGGTTGTTCTTCTGACTTAGATTTAGCAAGTCATTCTACAACTCACCTCAGCAGAAAATATCTTAATGTCTTTTTGTTTCCAAGCAAGCCACCTTTAAGTAACAGCTCTTTTTCAATTTGAATTTTCAGGACTCCTTCTCAGTTCTTCACATGAGATTTAATCATTTAGGTATAACTGATTCCTCCATTAACCTATAGAGTTTAATATAGGTTCACAGGAATTCAACTGTTATTTCCTGAGTGACTTCTTTGCCAATAATTTTACTCAGATCATCTCTATTTATTATACCAATAAACTAAGCAATAAATAACATTGCCATATGCCTTTTCATATTTTTTGATTCTTAACAAACAG
Seq C2 exon
GAAGCCTTGGCTCAAGCTTTCTGGATTGACATCAAGCGCATGGATGACCCAGAATGTTACTTTAATTCTTTGCCAAAAGAGTTAGAAGTAAAAAGAGATCGGATGGTACGTTTACTTGAAAGTGTTGGCCTAAAACCCATAGTTCCTGATGGAGGATACTTCATCATCGCTGATGTGTCTTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137944:ENST00000370491:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(17.6=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development