GgaINT0038345 @ galGal4
Intron Retention
Gene
ENSGALG00000006188 | CCBL2
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr8:14088247-14089203:+
Coord C1 exon
chr8:14088247-14088336
Coord A exon
chr8:14088337-14089016
Coord C2 exon
chr8:14089017-14089203
Length
680 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTGAACATTGTCTTTCCAGGAG
3' ss Score
8.04
Exon sequences
Seq C1 exon
CTTGGTTGGTCTATTGGCCCCCAGAATCTGATTAAGCATTTGCAAGTAGTTCATCAAAATACACTATATACTTGCCCAACTCCATTACAG
Seq A exon
GTAGGTACAGATGGAGCCAAAGTAGTTATTTTCTGGCATAGCAAACTTGTAGGCCTCACCATGATAAAACAATAATCACAACAATTAATTTTTAATTGTCAAAATATGTCTTCTGGGGTGCTAGAAAAAGATGATAAACTTCATTAGCTGACCAGACATTAAAAAACAAAAACAAAACAAAAACAAAAATCCATAACAAAACAAAACCGAGGAAGTCTCGCTGATTCTTCTTTCACATACAAACTACTGCTTCTTGCAGAAAGCACCACTCCTAACAATCTATGTGATTTCCTGCCAAATGTAAGTTAAAGTTGATGCAGTAGGGTCTTGTTTTACTGACAGTTATCTTTACCTTTTAGATCACAGTTTACTTATTAGTATTATATGATTATATTGTCACTAAACTAAGCTTTAGTTCATGTTGTAAACTCATATGTCTGGAGCTTTGGTATGTGATTAATGCCTAGCAAGCAAGTGGTGCTTTGGGTTTTGCTGCAATACAAATTAATGAACAAATTACACTATTTGATGTAGTTTGTGTAATTTTTATTTGCTGATTTGCTTAATAAGAGCCAGATCCTACTACAGAAACAAAGAAAAATCTGCATAATTTCATAATGAAATTTCCTTAATTTCGTAAGTGTGAGTGTCCATAAGTATTTTGAACATTGTCTTTCCAG
Seq C2 exon
GAGGCTTTGGCACAAGCACTTTGGGTAGACTATAAACGCATGGATGACCCTGACTGCTATTTTTACTCACTGCCTCGAGAGCTGGAAAGCAAGCGGGATCGGATGGCTCAGCTACTTCAAGAAGTTGGGCTGACACCGGTTATTCCAGAAGGAGGATACTTTATGATTGTTGATGTTTCTACATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188:ENSGALT00000009984:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(7.6=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGTTGGTCTATTGGCCCC
R:
ACATCAACAATCATAAAGTATCCTCC
Band lengths:
266-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]