BtaINT0032429 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000505 | CCBL2
Description
Bos taurus cysteine conjugate-beta lyase 2 (CCBL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075370]
Coordinates
chr3:55137490-55140818:+
Coord C1 exon
chr3:55137490-55137579
Coord A exon
chr3:55137580-55140631
Coord C2 exon
chr3:55140632-55140818
Length
3052 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTTCAATCTTAATATACAGGAA
3' ss Score
8.62
Exon sequences
Seq C1 exon
CTTGGCTGGTCCATTGGTCCTAAACATTTGATAAAACATTTACAGACAGTTCAGCAAAACACCGTTTATACTTGTGCAACCCCTTTACAG
Seq A exon
GTATGTGTTACAGTAATTTAGGGCTGCTCCATGGTCTTTGGGCAGAGGTGTTATTTTTATGTTGTGTACTTCTGTCTCAGACTTCCCTAGTGGCTCAGATGGTAAAGCCTCTGCCTACAATGCGGGAGACCCACATTCAATCCCTGGGTCAGGAAGATCTCCTGGAGAAGGAAACGGCAACCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAACCTGGTAGGCTATAGTCCATGGGGTCGCACAGAGTCGGACACGACTGAGCAACTTCACTTTCTTTCACTTTCAGTTGGCTCAGTTCCTTCATGTCCTTCCAGTATAATTTGGAAATTTAGAAGCAAGCACATATTCATTGCTATCAAGAATGGTTTTGGTTTTAACACAAAAAATTTAACTTTAATCACTCATACATTGCTGGTGGGGATTGCAAAATGCTGCAAATTCTCTGGAGGATATGACAGCCCCAAGCAAAATTTCAGGTATGTGTGCTCTGTGAAGCAGCAGTGTATCCTCTGAGCACTTACCTTATAGCTGTTCTCTGCAGATCAAAGAAGCTCTATGTGTACGTGGTCATTGCAGAAGATGGGGAATAGTTCATCTATAGACAATGGATTAAATAGACTATGGTCTATCTAAACATTTTAATGTTATATGACTGTATTGGTTTCCTAGTTGTCTGTACCAAATTACCACCGTGATGACTCAGATGGTAAAGAATCTACCCATAGTGTGGGAGACCTGGATTCGATCCCTGGGTCAGGAAAATTCCCTGGAGTAGGAGATGGCAGCCCACTCAGTATTCTTGACTGGAAAATTCCATGCACAGAGGCTGTAGTCCATTGGGTCACAAAGAGTTGGACATGACTGAGCAACTAACACTTGGGTACACTTAGTGGCTTAAAACAACACAAGTTTTTTATCTTACATTCTGGAGGTCAGAAGTCCATAAGGGTCTTTCAAGGCTAAAAGCAAGTGTCGACCCTGCTGCATTCCCCCTGGAGGCTCCAAGGCAGAATCTGCTCCTTGTCTTTTCCAGCTTCTGGTGGTACTCGCATTCCCATGGTCACATTACTGCCACCTCTGCCTCTATCAACACATAGCCCCTATAACACTGACTCTCTTGCCATCTTCTTTCTCTTAGAAGAATCCTTATGATTACATTAGGCCCACAGATAATCCAAGATAATCTCTCTATCTCCAAGGTCTTTAACTTAAGTCACATTTGCAATGTTAATTTTACCATGCAAGGTAACATATTTACAGGTTCCAGGCATTAAGATGTGGACTTCTTTAGGGGCCATTACTCTATCACGATGGCTGTTTAAAAGTGAAAAGAAAGGAAAGGGAAAGGAAAAACAAAAAAGAATGAGAAAATTCTATAATTACTGATATGGAAAGATATCCAAGATATATTGTAAAAATAAAAGCAAAATACAGAGCAGTATATATTATTATTTATGTTGTATTCTGTGTAAGAAAGGGAGAAAACTATTTGCTTATACTTTCTTAAAGAATCTCTGGAAGAACCATATGAAAATAGTTAAAGTGGCTATCTGGGGTAAAGGGAACACATGAAACTAGTATAGATAGGGTCTGGGGTGGGTTGCAAGACTTTTTAATGTATATTTTTTTTGTATTGTTTCTAGTTTTTTAATATCTATAAAACAGGGATCTATGTATTATCATTCTGTGAATAATCAGAATACTGAAAACTATTTGTTGGGAAGCAGTTAAAAAGCCAAAACTGGGAATATGTTGGCTACAATAAACTTTTTTGTTTCCTATCAAAAATACCTACTGAATAAGAAAAAAAATCCTAATAATTTTTTTTTCAAATGACTATAGAGTGATATCATGATAAAAGCTAGTTGGATGTTGATTTTATTGTATTCAACTCTTTTCATTCTCAAAATAAATCTATTCAGTTATTAAACAAATACTTACTAAGTGTCAGAGATAAAGCAGTCAAGAATTCCTGCCCTTTTGAAGCTTATAGCCTGTTGGGGGAGCACAGATAATAAACAAGTAAATGTTTTAATAACATAATATGTCAGATGTTGATAAAAGCAGTGGAGAAAAAATGTGAATGATTAGTACAGGGATTCATATACTTATGAAGAGTGACACAGTGGATCGATCAGCTTTCATTTACACTTTTCTTGTCCTGAAAGGTAATGGGGAAACGCTGGTTAGTTTATCATTTCTCTGATTGTCCTTCAGGCTTAGATCTAGCAAATCACTCTAATGCTAACCTTAGTAGAAAACACCATTGTCTTTTTCATTTCCAAGTAAGGCATCTTTATATAATACAGTTGGCCCTCCCTATCCACAGGTTCTGCATCCATTGATTCAGCTAAAGATTGTGGATCCAGGGTTGGTTGAATTCACAGATACAGAGCCCATGGATGCATTTCATATAAAAGACTTGAACATCCTTGGATTTTGGTATTTGTGGGGGCCCTGGAACCAGTCACCTGTGTGAAGAGTAAGGGACAACCGTACCTCTATTTCAACTTGAATTTTTGTGGTTCATCCTCAGTTCTTCACATTAGATGTAATCATTTCCATGTAACTTATTCTTCCATTAGTCTGTAGAATTTCACATAGGTTCAACTGTAATTCCCTGAATGACTTTCTTGTCAGTAGTATTACTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCTACCAGGCTCCCCTGTCCCTGGGATTCTCCAGGCAAGAACACTAGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTTGCTCAGTTGTATCCGACTCTTGGTGACCCCATGGACTTCAGCCTACCAGGCTCCTCCGTCCATGGGATTTTCCAGGCAAGAGTACTGAAGTGGGATGCCATTGCCTTCTCTGGTAATATTACTCAGACAGTCTTTATTTATTATACCAATAAACTTGGCAGTACATAACATTGCCATATTTCCTTTCCATATTTTTCAATCTTAATATACAG
Seq C2 exon
GAAGCCTTGGCTCAAGCTTTCTGGATTGACATCAAGCGCATGGATGACCCAGAATGTTACTTCAATTCTTTGCCAAAAGAGTTAGAAGTAAAAAGAGATCGGATGGTACATTTACTTGAAAGTGTTGGCCTAAAATCCATAGTTCCTGATGGGGGATACTTCATCATTGCTGACGTGTCTTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000505:ENSBTAT00000000643:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(7.5=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]