DreINT0042131 @ danRer10
Intron Retention
Gene
ENSDARG00000098222 | ccbl2
Description
cysteine conjugate-beta lyase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1299]
Coordinates
chr6:25275024-25275373:+
Coord C1 exon
chr6:25275024-25275096
Coord A exon
chr6:25275097-25275169
Coord C2 exon
chr6:25275170-25275373
Length
73 bp
Sequences
Splice sites
5' ss Seq
CATGTCCAA
5' ss Score
-16.82
3' ss Seq
AATCCACTTTTCTATACAAGGTG
3' ss Score
5.77
Exon sequences
Seq C1 exon
TTGGGCTGGTCCATTGGGCCTGAACACCTGATCAGACACCTGCAGACTGTCATGCAGAACAGTCTATATACAT
Seq A exon
GTCCAACACCATTACAGGCAAGTATGTGACATTTTTTGATTGTGGTTGTATACAATCCACTTTTCTATACAAG
Seq C2 exon
GTGTTTCTGCACAACAGGAGGCTGTTGGCCGGGGTCTTCTTCGGGACTTTGAGCTGATGGGTCAGCCAGACTGCTACTTCTCCGCTCTGGCTTTAGAACTGGAAGGTAAAAGAGATCGCATGGCTGCCATGTTGGCTCAGACCGGCATGACTCCAGTGGTTCCTGAAGGAGGATACTTCATGATAGTAGATGTCACAGCGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098222:ENSDART00000160978:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PD(12.4=94.1)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(17.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCCATTGGGCCTGAAC
R:
CCAGTTCTAAAGCCAGAGCGG
Band lengths:
170-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]