GgaINT1009208 @ galGal4
Intron Retention
Gene
ENSGALG00000004986 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr17:4936782-4937207:-
Coord C1 exon
chr17:4937097-4937207
Coord A exon
chr17:4936900-4937096
Coord C2 exon
chr17:4936782-4936899
Length
197 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
GCCTTCCTCCCACCATGCAGTTC
3' ss Score
7.16
Exon sequences
Seq C1 exon
GTGTGCGACAGACCACAACTCGGACAACACGACGGCGATGCTGCAGGAGTGGCTGCAGGCAGTGGGCAGCAATTACCACTCGGTGGCATGGAAGGCAGAAGAGGGGCCCAG
Seq A exon
GTGGGGCTGGGAGGGGACAACCCCGCGTTGCACCCCCCCTCCTTGCACCTCTCCCCTGCACGCACACGGGGTTTTGCATGCGTGCTGCTGCCAGCTCGGCTCGGCGCTGACTCAGGCAGACGGCATGCAGTGTGTGTACTGAGTTTGTGCGTTCCCAGCCGGTGCTGTTAACCCTCTGCCTTCCTCCCACCATGCAG
Seq C2 exon
TTCTTACCCCGACGAGCTCGGCCCCAAGCACTGGAGCGACAAACGCTATGAAAACCTGATGAGGCTGAAGCAGGAGGCTCTGAGCTACGCCCGGGGGCTGCGGGCGGATTACATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004986:ENSGALT00000007990:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=FE(31.4=100)
A:
NA
C2:
PF137041=Glyco_tranf_2_4=FE(33.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCGACAGACCACAACTC
R:
GGATGTAATCCGCCCGCAG
Band lengths:
227-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]