HsaINT0033957 @ hg38
Intron Retention
Gene
ENSG00000167123 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr9:128422868-128423263:+
Coord C1 exon
chr9:128422868-128422978
Coord A exon
chr9:128422979-128423145
Coord C2 exon
chr9:128423146-128423263
Length
167 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGTG
5' ss Score
1.16
3' ss Seq
TCTCACCTCTATCCCCTCAGGTT
3' ss Score
11.06
Exon sequences
Seq C1 exon
GTGTGCCACGGACCACAATGTGGACAACACCACAGAGATGCTGCAGGAGTGGCTGGCGGCTGTGGGCGATGACTATGCTGCTGTGGTCTGGAGGCCTGAGGGCGAGCCCAG
Seq A exon
GTGGTGATCTGAGGGGAAGGGTGCTGGGGAAGATGGAGAACAGCTGCAGCCCAGAGAGGAAAAGGGACAGCCCAGAGCCACAGCCTCCAAGCCAGGGCTCTGTCCACTGCCCTGCAGAGAGGGAGGGGCATGTACCCCATGGGAACATCTCACCTCTATCCCCTCAG
Seq C2 exon
GTTCTACCCAGATGAAGAGGGTCCCAAGCACTGGACCAAAGAAAGGCACCAGTTTCTGATGGAGCTGAAGCAGGAAGCCCTCACCTTTGCCAGGAACTGGGGGGCCGACTATATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167123:ENST00000420512:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=PU(30.4=96.0)
A:
NA
C2:
PF137041=Glyco_tranf_2_4=FE(32.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCACGGACCACAATGT
R:
CAGGATATAGTCGGCCCCC
Band lengths:
227-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development