DreINT0045406 @ danRer10
Intron Retention
Gene
ENSDARG00000079049 | cercam
Description
cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
Coordinates
chr10:10396751-10397095:+
Coord C1 exon
chr10:10396751-10396861
Coord A exon
chr10:10396862-10396977
Coord C2 exon
chr10:10396978-10397095
Length
116 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
GGTTTGTTTTCTTCACACAGGTC
3' ss Score
8.54
Exon sequences
Seq C1 exon
GGCAGCGACGGACCACAACATTGACAACACGACAGCTATGCTGCGAGAATGGCTGACCGTCATGCAAACTCAATATCACTATGTGGAGTGGAGACCTTCAGATAAACCCAC
Seq A exon
GTGAGTTGATCATCACATGGACAAATAGCAAATAAAAACACAATTTAACAAATGCATTTTTTCATAAGTGTATGTGCCATTAGCAAGGTTTGAATTGGTTTGTTTTCTTCACACAG
Seq C2 exon
GTCTTATGCAGGAGAATTGGGGCCAAAGCACTGGACAAACAGCCGCTATGAGTATATTATGAAGCTTAAACAGGCGGCATTAAACTTTGCCAAGAAACGCTGGGCTGACTATATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079049:ENSDART00000109432:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=FE(30.6=100)
A:
NA
C2:
PF137041=Glyco_tranf_2_4=FE(32.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGACGGACCACAACATTG
R:
CAGAATATAGTCAGCCCAGCGT
Band lengths:
226-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]