GgaINT1009596 @ galGal4
Intron Retention
Gene
ENSGALG00000026027 | CLIC3
Description
chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
Coordinates
chr17:417055-417418:-
Coord C1 exon
chr17:417293-417418
Coord A exon
chr17:417162-417292
Coord C2 exon
chr17:417055-417161
Length
131 bp
Sequences
Splice sites
5' ss Seq
CACGTCAGT
5' ss Score
5.37
3' ss Seq
CTGTGCCCATGTCACCGCAGGTT
3' ss Score
9.37
Exon sequences
Seq C1 exon
GGCACTGGATGTGCTGAAGGATTTTGCGCCCGGCGCTCAGTTGCCTGTTCTGCTCTACAACGGAGACTCCAAGACCGACACAGTCACCATCGAGGACTTCCTGGAGGCCAGGCTGGCCCCCCCCAC
Seq A exon
GTCAGTGGCTGGCACTGCCCTGAGAGGGGCTAAGGGGAGAGGGGGGGGTGGTGGAGAAGCTGAGGAAGGGGCGGGGGTGGCAGCTCCCAGCCCTGCTGTCTCCTTCCCCAGCTGTGCCCATGTCACCGCAG
Seq C2 exon
GTTCCCCAGCCTGGTCCCGCGGTACAAGGAGTCAAGGCTGGCTGGAAACGACATCTTTCACAAGTTCTCCACCTTCATCAAGAACCCAGTGCCTGCTCAGGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026027:ENSGALT00000043084:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(13.1=41.9)
A:
NA
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(26.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGATGTGCTGAAGGATT
R:
AGGCACTGGGTTCTTGATGAA
Band lengths:
218-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]