RnoINT0037282 @ rn6
Intron Retention
Gene
ENSRNOG00000015184 | Clic3
Description
chloride intracellular channel 3 [Source:RGD Symbol;Acc:1307249]
Coordinates
chr3:2677328-2677696:+
Coord C1 exon
chr3:2677328-2677453
Coord A exon
chr3:2677454-2677589
Coord C2 exon
chr3:2677590-2677696
Length
136 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGC
5' ss Score
5.16
3' ss Seq
CAAACCACTCACGCCTACAGCTT
3' ss Score
4.49
Exon sequences
Seq C1 exon
GGCATTGGATGTGCTGAAGGACTTCGCACCGGGATCACAATTGCCCATCCTACTCTATGATGGGGACGTCAAGACAGACACACTGCAGATTGAGGAGTTTCTGGAAGAGACATTGGGGCCACCCGA
Seq A exon
GTGAGCACCTGATGGGGCAGGAGGGCAAAGATGGGACCTCCTCGGGGGACACCTGGGAGAGTGCCTAGGTAGGGTGCTTTGAGGCACAGTGTACTTAAGGGTCTGATTGGAGTTCTCAAACCACTCACGCCTACAG
Seq C2 exon
CTTTCCTGGCCTGGCACCTAGGTACAGGGAGTCCAACACAGCAGGCAATGACATCTTCCACAAGTTCTCTGCCTTCATCAAGAACCCAGTGCCTACACAGGACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015184:ENSRNOT00000020497:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(8.5=25.6)
A:
NA
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(27.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTGGATGTGCTGAAGGA
R:
CATCGTCCTGTGTAGGCACTG
Band lengths:
233-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]