GgaINT1010885 @ galGal4
Intron Retention
Gene
ENSGALG00000010153 | CYP21A2
Description
steroid 21-hydroxylase precursor [Source:RefSeq peptide;Acc:NP_001092828]
Coordinates
chr16:40214-40602:-
Coord C1 exon
chr16:40451-40602
Coord A exon
chr16:40310-40450
Coord C2 exon
chr16:40214-40309
Length
141 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCCATTTCTCACCCCACAGGAG
3' ss Score
9.71
Exon sequences
Seq C1 exon
CGTCCCTGGTGTCGCGGGGGGGGCAGGACCTGGCGCTGGGGGATGCATCCCCAGAGTGGCGACGGCAGCGGGGGGCAACGCGGGGAGCACTGGCGCGAGCTGTGAGGCACCTGGAGCCCCTCCTGGAGCTGCAGGGCTGGGCGCTGTGCCAG
Seq A exon
GTGAGCACCCCAACACAGGGCCCTCCAACCCCAGGTGGACCCCATCAGCCCCAGGGCTGTGCTGCCCGTCCCCTTGACTCACCCCAACCCCCCTTGTGGGGCACCCGCACCCGCTCAGTGACCCCATTTCTCACCCCACAG
Seq C2 exon
GAGTTGAGCTCTTATGGGGCTGCCCCAGTGGACCTCTTTGAGGCGTTCACGTTCCACACCTGCAGCACCATCTGCCGCCTTGCCTTCGGGGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010153:ENSGALT00000016503:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
NA
C2:
PF0006717=p450=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCATCCCCAGAGTGGC
R:
GAAGGCAAGGCGGCAGATG
Band lengths:
198-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]