RnoINT0044198 @ rn6
Intron Retention
Gene
ENSRNOG00000000428 | Cyp21a1
Description
cytochrome P450, family 21, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:2461]
Coordinates
chr20:4488287-4488627:-
Coord C1 exon
chr20:4488485-4488627
Coord A exon
chr20:4488383-4488484
Coord C2 exon
chr20:4488287-4488382
Length
102 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AGCTTGTCTCTCCTCCACAGCGC
3' ss Score
9.86
Exon sequences
Seq C1 exon
GAAAGATGAACTTTGACCTCTCCATGGGGGATTATTCTCTAACATGGAAAGCCCACAAGAAACTCTCTCGTTCGGCCCTGGTGCTGGGCATGAGAGACTCCATGGAACCTCTGGTAGAGCAGCTGACCCAGGAATTCTGTGAG
Seq A exon
GTGAGGCTGGGCTCTTGTGGCCTGACCCTCTTGGGGTCAGCTTCCCTCTCCCCCAGTCCCCCTCTGTCTCCACAGCCTCTACAGCTTGTCTCTCCTCCACAG
Seq C2 exon
CGCATGAGAGCCCAGGCCGGTGCCTCTGTGGCCATCCATAAGGAATTCTCCTTACTCACCTGCAGTATCATCAGCTGTCTCACTTTCGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000428:ENSRNOT00000031548:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.5=100)
A:
NA
C2:
PF0006717=p450=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGAACTTTGACCTCTCCATGG
R:
TCTCCGAAAGTGAGACAGCTGA
Band lengths:
234-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]