HsaINT1010459 @ hg38
Intron Retention
Gene
ENSG00000231852 | CYP21A2
Description
cytochrome P450 family 21 subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:2600]
Coordinates
chr6:32039094-32039457:+
Coord C1 exon
chr6:32039094-32039248
Coord A exon
chr6:32039249-32039355
Coord C2 exon
chr6:32039356-32039457
Length
107 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CTCACACTGTTTCTCCACAGCGC
3' ss Score
11.08
Exon sequences
Seq C1 exon
ACAAGCTGGTGTCTAGGAACTACCCGGACCTGTCCTTGGGAGACTACTCCCTGCTCTGGAAAGCCCACAAGAAGCTCACCCGCTCAGCCCTGCTGCTGGGCATCCGTGACTCCATGGAGCCAGTGGTGGAGCAGCTGACCCAGGAGTTCTGTGAG
Seq A exon
GTAAGGCTGGGCTCCTGAGGCCACCTCGGGTCAGCCTCGCCTCTCACAGTAGCCCCCGCCCTGCCCGCTGCACAGCGGCCTGCTGAACTCACACTGTTTCTCCACAG
Seq C2 exon
CGCATGAGAGCCCAGCCCGGCACCCCTGTGGCCATTGAGGAGGAATTCTCTCTCCTCACCTGCAGCATCATCTGTTACCTCACCTTCGGAGACAAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231852:ENST00000435122:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(11.2=80.8)
A:
NA
C2:
PF0006717=p450=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCTGGTGTCTAGGAACT
R:
CGAAGGTGAGGTAACAGATGATGC
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains