GgaINT1011003 @ galGal4
Intron Retention
Gene
ENSGALG00000009558 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr7:17536918-17538308:-
Coord C1 exon
chr7:17538116-17538308
Coord A exon
chr7:17537022-17538115
Coord C2 exon
chr7:17536918-17537021
Length
1094 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ACAACCTTTGTCCATTTCAGGAA
3' ss Score
11.06
Exon sequences
Seq C1 exon
GCGTCACCAGGCGAGCGGCAAGGCCCGCGCTGCCCGAGCGCCGAGGATGCGCCCCGCCGTCGCAGGGAGGGCCGCGCCGCGGGCGCCCAACGTGTGCCGCCTGCTCGGCCGCAGGGCCCGCGGGTTTTACGCCCGGGACGCCGGCGTGGCTCTCCGGAAGAACATGGGGCTCCTGAGAACCATCCTCTGCCAG
Seq A exon
GTAAAGGCGGCGCGGACGCGACGCGCGTTTCGGAAGCCGCTGGGTCGCGCTAGCAAGTCTGGGGAGGGAATATAAGAGTGTAGCCGAGGGAGTTAGAATGGTTACATTATTTCATGAGACTCAGACCTAGAAACCTACGGAGTACTGCGGTGAAGAAACAGCAAAAATGCCTGTAAATCTCACGTTCATGTTAGAAATTGCCTCTTATGAGATTTTATATTGCTTCTTTCATCCCTTAAGATGGTTCATTTTAAATCTGTAATGATATGGGGAGCTCTCAAAGCAAAATAAGAAAATCAGCAGAGGGCTGCAGGTAAACAAACATATCCTGAACATGTCAGTGACATTTTGGTTACAGAAACAGAAATTACACCAATTGCAGACTAAATGTGTTTCATTTAAGAATGATTACTGCTGCTGTGCAGTAGCTGACAGCCCGTATGTGGCAGCCAGCAGGCAGTTGTATTACCACTGACTTCCAGTAAAGGTACTGTCTGATAAAGCGGCCCGTAATGCAGCCATTTGTATGGGCACGTGAGGGCGGTCCCCCTGGCCTATACAAATGCTTATGTTCTGTAGGACTGGAACCTGTGTTAGGGGCATAGAGCTGCTGGTGTCTGCAATACATACATGTAACCATCAGTGTGAGAAGACTGTGCCACTTCCAGCTGATGCTGCAGATAACAGACAGCCTTTCTACCTTTCATACCAGTCACTGGTAAGATGGAAGCAATGCTCAGTAAAGTCAATTACTTATCTATAAAATAATGGTATGTGCAGATTTACACAATGGGGGATTTTATCTTTAATATTTTAACATAAAAATTGCCAGTTCGAATGGAGGCAGTTAACAACAAGATGTTATGACACATGTTGTTCATAAGCTAGTAAAGAGTTACTTTAGTTTTTAAAAGAGAGAAGTCTTCTCTAAAAGTGTTTTGTTTAAAAAAAAACAAACAAAAACCCAAAAATCCACCACAATTGTACAACAGGAAAGGTCCCACTACATTCAGCCATCAAGCTGCAGGAGCAAGCATTTTCCAAATGCAATTTTTTCACCAGTCCATCACTGTTACAACCTTTGTCCATTTCAG
Seq C2 exon
GAAAGCACTAAATTCAAGAACGTTTGGACAACTCATTCTGCATCTCCTATTGCTTATGAAAGAGGAAGAATTTACTTAGACAACTACAGATGCTGTATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558:ENSGALT00000015562:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]