HsaINT1010647 @ hg38
Intron Retention
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr2:171434251-171435186:+
Coord C1 exon
chr2:171434251-171434703
Coord A exon
chr2:171434704-171435082
Coord C2 exon
chr2:171435083-171435186
Length
379 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
AAATTCTTTATGTCTTTTAGGAA
3' ss Score
8.82
Exon sequences
Seq C1 exon
ACTAGGAACTACATTTCCCGGTGAGAGAGCGGCTCCGGCCGGCCGCGCGGTACCGGAGCGTCGCACTGTCAGCGGCCAGAGAGCCTGGGGCAGATCGAAAAGGGAGTGCTTCTTCCCTTCTCTCCGCGCTCTGGCGGTGCAAGCGGCTCTGCTTTCCCTCGCCCCGCCGTCGGGTGCTCCCTGCCCGCCTCCCCGTGTCAGCTTTCCCTGGGCCCCGCCGGGAAAGTCTGGGCCTCGAAATTCGAAGGCAGCGGCGGCTGCCCAGCACGGGAGTGTGGGGCGCGCCACTCGGCGGCCCAGCCTACCCAGGGCCCGGCCCGCGCCTCCATGGGCCCGACCCGGAAGCCCAACGTGTGCAGCCGGCTGAGTCGCCGGGCGCTGGGCTGCTTCTCGCGCGACGCAGGCGTGGTGCAGAGGACCAACCTGGGCATCCTGCGGGCGCTGGTGTGCCAG
Seq A exon
GTGACCGCCAGCCGGCCGGGGCGGGACGGAGGGCCGCGGGCGCGCGGCGGCCGAGCCTCCTGCGGGGATGCGGTTTTAACGCGCTGGGGCCTCCCTTTATAGGGTCACATGTGATGGGGAGGAGGATACAAGCCCGGAATCTGGGATAGGTGGTAATAGGGCCACCAGCTGCTTTTAGTTTTACGCTTCTTATGTCTTACCTGGAAACAATTATTCTAAAAGTTGGTCACCTCATTAAGCCAAAACATGAGGGCAGAGTGGAGGAAGGATGCAAAAAGTTTTAAAATAATATAGGTGACATTATGTTGCTTTGAAAATTTAAAATCTAACTTAAAGCCTAAGAGTTCTTTCCTGAACGGAAATTCTTTATGTCTTTTAG
Seq C2 exon
GAAAGTACTAAATTTAAGAATGTCTGGACAACTCATTCCAGGTCACCTATAGCCTATGAGAGAGGAAGAATATATTTTGACAATTATCGGCGCTGTGTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827:ENST00000375255:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAGCTTTCCCTGGGC
R:
ACACAGCGCCGATAATTGTCA
Band lengths:
357-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains