GgaINT1011496 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10076811-10077271:+
Coord C1 exon
chr18:10076811-10076980
Coord A exon
chr18:10076981-10077048
Coord C2 exon
chr18:10077049-10077271
Length
68 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GAGCCCCCACCTGTCCCCAGCCT
3' ss Score
4.53
Exon sequences
Seq C1 exon
ATCGATGCGTGCGAGGAGCTGTGCCAGGAGGTGTCGGGCTTTGCCAGCACCGTGGTGTTCAGGGGGTGGCTGCAGAGCGACTGCCGCCCCTTCAATCAGGTGCTGCTGAGTGCTGCACGCAGCCGGGGCCGGGCACTGCGGCAGCACCTCACCGACCACGTCACCAGCAG
Seq A exon
GTAACAGGGGATGGCATCGCTGGGGGGCACGGCACCCTGAGCTCCTCTGAGCCCCCACCTGTCCCCAG
Seq C2 exon
CCTGCAGGAGCTGGAGGCCTTCATCAAGGAAGCCACCGCTGGCTTGAGCAAGCAGGTGCAAGAAGGAGACTATGATGGACTAGTGGAGGTGATGGGGCACCTGCTGAGGGTGAAGGACCGACAGGCAGCCACCGATGGCATGTTTGGGCCCCTGAAGGAAACCATTGCATTGCTCAGCACGTATGGGGAGGAGATGCCCGAGGAGGTGCACCAGCAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAATCAGGTGCTGCTGA
R:
CCCCATCACCTCCACTAGTCC
Band lengths:
179-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]