RnoINT0048803 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107112309-107113172:-
Coord C1 exon
chr10:107113003-107113172
Coord A exon
chr10:107112532-107113002
Coord C2 exon
chr10:107112309-107112531
Length
471 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CAAGTCCCCTCGTCCTGCAGCCT
3' ss Score
7.39
Exon sequences
Seq C1 exon
ATTGACTCCTATGAGAAGCTGTACGAGGAGGTGTCCAGGTGCGAGAACACCAAGGTTTTCCACGGCTGGCTGCAGTGCGACTGCCGCCCCTTCAAGCAGGCCTTGCTCAACACCATCAAGCGCTGGAGTCTCCTGTTCAAACGATATCTGAGCGACCATGTGATCAACAG
Seq A exon
GTAAGGCTGTCCCTGCTGCTGTGACGACACTAGGGTCTCCCTGGGGACCTGGGCAGCCTGGGAGAAACGCCAGGGGATTCGTACTCGTAGCCTTTGGCCTTCACACACGTGGTTGGGCGTCGTGGCCCAAGCAGGGCAGGCAGGAGGGTGAAGCACCTGTCAGGCTCTGCAACAAAGCCTGGAGCCTTGGTTGTAGCATGAGGCTCATCTCATCTACAGCAATGTGAGCATGCTCTCTAGCTGAGCCCACCCGGTGGGGCTGGCTGTCCTGGGCTGTGACTTCCAAGATAGCGCTCGAGGATCAACCTGGTCTATGCCAACAGGATCCTGGCGACATCTAGGCTGAGGGGACTCTACGCGGGCAGTGGCTGCCCCTCTCCCAGTGATGCCCTGCATGGCAGTCAAGCGTCCTTTCGAGGACGACCTTGAGGTTCCTGAGGAGGAGCCTCACCAAGTCCCCTCGTCCTGCAG
Seq C2 exon
CCTTGCCGATCTGGAAAGCTTCATGGGTGTCACCCGGACTGGCCTAAAGAAGCCACTCAAGGAGGGAGACTATGACGGACTGGTGGAGGTTATGGGGCACCTAATGAAGGTCAAGGAGAGGCAGGTGGCCACCGACAGCATGTTCGAACCCCTGAAGCAAACCATCGAACTGCTCAAGTCCTACGGGGAGGAGATGCCGGAGGAGACCTACTTGAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGAACACCAAGGTTTTCC
R:
AAGTAGGTCTCCTCCGGCATC
Band lengths:
343-814
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]