HsaINT0049524 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76525554-76526594:-
Coord C1 exon
chr17:76526425-76526594
Coord A exon
chr17:76525777-76526424
Coord C2 exon
chr17:76525554-76525776
Length
648 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ATGGTCCCCTTGTCCCTTAGCCT
3' ss Score
6.64
Exon sequences
Seq C1 exon
ATCGACTCCTACGAGAAGCTGTATGAGGAGGTGTCCAAGTGCGAGAACACCAAGGTGTTCCACGGCTGGCTGCAGTGCGACTGCCGCCCCTTCAAGCAGGCCCTGCTCAGCACAATCCGGCGCTGGGGCTTCATGTTCAAGCGGCACCTGAGCAACCACGTCACCAACAG
Seq A exon
GTGGGTCCCCAGCCATGTACTCGGGGAGCCCAAGGAATGTGCAGAGCACCAGGGAGTGGCCTTCCACTTGAGTGGGTGGCATTTGTCAGGTGCCTCCTCTGGGGTAGCAGGGGGTGGAGGCTGGGCTTCAAGGCCAACTACCCCACCAAGCGTGAGCAGAAAGGTGTCACCGGGCTGCGAGCAAACATTATCCCTTCTCCAAACCCGGTGTACCGAGCACCTGCTCTGTCCGGGTGCCAGATGCGGAGGAAACCAGAAGTCTGTCAGGGAAGGCTGGCGCTGAACAAACAGACTGGCAGCTGTGGGATTATAGGCGGCCATCAGGGCCATGATGGGCACAGTGCCAGGAGAGAGCATTGCCTGGCTGAATTCCATCCGGGAGGCTAGTGAAGGCCTCTGGGATGTGGCCGTAGCTTGGGACTTGAGGATGGGCTTGAGCTAAGTTGCTGAGGCTTGGGGTGATGTCTGGGCAGGGGCTGAGTGAGCTGGAGGGATCCAAGGTGGGCAGGGGCGCTCCCTCCCCACCTGGGGCCTTCAGTGATGGCCAGTTGACCTCACCGCGGTCGTCCCCCTCTCATGGGGCTCCGTACCATCAAGGGTGGGCCTAAGGGGGGCTGGGGCCACACAAATGGTCCCCTTGTCCCTTAG
Seq C2 exon
CCTGGCTGACCTGGAAGCCTTCATGAAAGTCGCCAGAATGGGCTTGACCAAGCCCCTCAAGGAGGGGGACTATGATGGGCTTGTGGAGGTGATGGGGCACCTGATGAAAGTCAAGGAGAGGCAAGCAGCCACCGACAACATGTTTGAGCCCCTGAAGCAAACCATCGAGCTGCTCAAGACCTACGGGGAGGAGATGCCAGAGGAGATCCACTTGAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAGTGCGAGAACACCAA
R:
TGGATCTCCTCTGGCATCTCC
Band lengths:
348-996
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)