GgaINT1011536 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10092838-10093332:+
Coord C1 exon
chr18:10092838-10092960
Coord A exon
chr18:10092961-10093138
Coord C2 exon
chr18:10093139-10093332
Length
178 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
GCGAGGACCTGTGTCTGCAGGTC
3' ss Score
5.24
Exon sequences
Seq C1 exon
GTGCTGGCCATCAAGAAAGAGGTGAGCCCGGCGGAGCTGGACTTCCTCTTGCGCTTCCCTTCCAAGGCCGGCGTCACATCCCCCGTGGACTTCCTGCAGCCCCAGGGCTGGGGTGGCATCAAG
Seq A exon
GTTGGTCATGGCTCATGGTGCAGTCCCAAGTGCAGCATAGTAGTGGGTTGGGGTTGAGCTGCAGCCCCCGGGGGGGTTGGGGGGGGGGTAGTGCAGAACCAGCAGCACTGCAGCACACAGCTCTGTGTTAACCCCCCCCGGATGGGGGGCAGCACCCAGCGAGGACCTGTGTCTGCAG
Seq C2 exon
GTCCTCTCAGAGATGGATGAGTTCAAGAACCTGGACAGTGACATCGAGGGCTCTGCCAAGCGATGGAAAAAGTTTGTTGAGTCCGAGGTGCCCGAGAAGGAGGTGTTCCCCAAGGAGTGGAAGAACAAAACGGCGCTGCAGAAGCTGTGCATGCTGCGCTGCATGCGGCCCGACAGGATGACCTACGCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(2.8=48.8)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCATCAAGAAAGAGGT
R:
CGCCGTTTTGTTCTTCCACTC
Band lengths:
256-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]