MmuINT0050794 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117899463-117901338:-
Coord C1 exon
chr11:117901216-117901338
Coord A exon
chr11:117899657-117901215
Coord C2 exon
chr11:117899463-117899656
Length
1559 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
GCTTTCCACATCTGCCTTAGGCC
3' ss Score
6.62
Exon sequences
Seq C1 exon
GTCCTTTCCATGAAGAAGGAGCTGAATCCGGTGGAACTAGACTTTCTCTTGCGGTTCCCCTTCAAGGCAGGCGTGGTGTCACCTGTGGACTTCCTGCAGCACCAGAGCTGGGGCGGGATCAAG
Seq A exon
GTGCGTCCTCACACTCAGTACCGAACCCCTTCCAACCAGTGCTGGGGATGCCTGCACCCCATTACGGGTAGAAGCCAGGATGACTGCAGCGCACAGGCAGCCCTGCACCTGCGTTGCTGGAGCATCACTGATCTCCACTGACCTGCTCAAGTCCAGAGGAGTCTCCTCCACAGGGACCTGCAGCCAGTCTCAGGCTGCCCTGTGCCAGCGTCCCTCAGCCTTACCCTGTTCCAAGTCTGGTCACTCCTCAGGTTCCCAGATTCATTGTCAAGAGCCCTCAGGTCCCAGGTCTCAAGTTGTAATCCAAATTGACCAGAGGAAGGCAGGGGGCCCAGGCGAGATACGCTGCTGGATATTTAATCACCTGTGAACCCCAAGATTGTGTTAGTTACTGAAAAAACCTGTTTCTAGTTGTGGTGTGGCTCAGTCCTTACACACCTTTAATCCCAAACAATGAAGTGTGTAGAAGGAAGCACCCATGTTTGAAAGTGATGTCTAATTGAGTGGCAGACAAAGTGACAAATCAGAGAAAAATTGACAGAACAGGAATGTGCCCACAAGAAGGGAGAGGGATTAGTGTAGAGAGAGAGAGAAAGAGAGAAAGAGAGAAGGAGAGAGAGAGAGAGGGGAGAGAGGGGAGAGGAGAGGAGAGAGGAGAGGGGAGGGGAAGAAGGGGAGAGGGGAGGGCAGAGGAGGGGAGAGGGGAAGGTAGAGGGGAGGGGAGAGGGGAGGAAGAGGAGAAGAGGAAGAGGAGGGGAAGAGAGGAAGAGGAGGGGAAGAGAGGAAGAGGAGGGGAAGAGGAGAGGAAAAGGAGAGGAAGAGGAAGAGGAGAGGAAGAGAAGAGGAGAAAGAGAAAGAGAGAGAAAGAAGAAAGAAAAAGAGAGAAGAGAAAGAGAAAGGAGGAGGAGGCAGCAGTTTTACTTGGAGAGTTGTACAGAGACAGACAGGTTGAAGAGAGAACAAGCCAGACACAGGGAAGACAGAATGAACCATCGAAGGAGAAGAAACCAGAAGACTGGAACAGATTGCCATAGTTAGTATGAGGCCAAGCAGAGCATTTCAAGAGAAGCAGTGAGAGAGAAGCCAGATTGACTCAGGCAGCTTGGAGAGGAGTTTAATTGTGCTGTGTTGACCAGCCAGCCAGAGTTCAGAAAGAGCCAGAAAGGGTGAGCTTTTTCAGCAGTCTCAGAGGCTGAAAACATTCTAGGCCTAGATAAGATTGTACAGAAGCTAGAAGCTTCCAGGGCTAGGCTAAGGTTAGCAGATAGATGCAGTGAACCTTCGAGACAACAATTACATCAGGTAAATAGAAGCTACTTTTACAGAGCTATCCCTGACAACACCCTCCTTGGAGAGGGGCTGACATGAGTCCCCAGGCCACATGCCCCAGAAGCTTGGCCTGCAGTCGATGGGAAGGATAGACAGGGTGATCTTAGTGACAGGTCACTCTGTCACCCTCCCCAGCGCCCACTAAGGGCCATCTGGGGAAGGTGCCCAGTGACTCGGGGTGTGCACGTGGTCACTGCTCTGCCCACATCTGCTTTCCACATCTGCCTTAG
Seq C2 exon
GCCCTGTCGGAGATGGATGAGTTCAAGAACTTGGACAGTGACATTGAGGGCTCGGCCAAGAGGTGGAAAAAGCTGGTGGAGTCGGAAGCGCCCGAGAAAGAGATCTTCCCCAAAGAATGGAAGAACAAGACCGCCCTGCAGAAGCTGTGCATGGTGCGCTGCATGAGGCCGGACCGCATGACCTATGCTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:70
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(22.5=48.8)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(71.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTTCCATGAAGAAGGAGCT
R:
CATAGGTCATGCGGTCCGG
Band lengths:
310-1869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: