RnoINT0048840 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107047211-107049315:-
Coord C1 exon
chr10:107049193-107049315
Coord A exon
chr10:107047405-107049192
Coord C2 exon
chr10:107047211-107047404
Length
1788 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GCCACCCACATCTGCCTTAGGCC
3' ss Score
6.19
Exon sequences
Seq C1 exon
GTCCTTTCCATGAAGAAGGAGCTGAATCCTGTGGAACTGGACTTTCTATTGCGGTTCCCCTTCAAGGCAGGCGTTGTGTCACCTGTGGACTTCCTGCAACACCAGAGCTGGGGCGGGATCAAG
Seq A exon
GTGGGTCCTCAAACTTAGTACTGAACCCCTTCCAACCAGTGCTGAGGATGCCAGCCGGCACCCCGTTACAGGTGGAAGCCAGGATGGCCGCAGCTCGCAGGCAGCCCTGCACCTGTGTTAGGCGGAACATCACCAGTTTCCACCAGCCTGCTCAGGTCCAGAGGAGAGTGGCATCCACAGGAACCTGCAGCCAGTCCCAGGCTACCCTGTGCCAGCATCCCTCGGCCTTGCCCTGCTGTCCCAGGTCTGGTCACTCCTCAGGTTCCCAGATTCACTGTCAAGAGCCCTCAGGTCCCAGGTTTCAAGTTGCAATCCAAACTGACCAGAGGAAGGCAGTGGCCCAGGCGAGATACGTTGCGGGATATTTGAGCACACTGTGAACCCCGAGATTGTGTCAGTTACTGAAAAACCCATTTCTAGCTGTGGTCTGGCTCAGCCTTAGCACACACCTTTAATCCCAAACAGTGAGGTTTGTAAAGTTTGTAGAAGGAAGCACCCATGTGTGAAAGTGATGTTTAATTGAGTGGCAGATAAAGTGACAAATCAGAGAAAGATTTGACAGAACAGGATATGCCCAACTCTCAAGAGAAGGGAGAGGGAAGCTACTTGAGGGAACAGTGCAGAGAGACAGAGAGACAGAGACAGAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAAGAGGAAGAAGAAGAGGAGAAAGGAAGGAGGAAGAGGAGAAAGAAGAGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAAGAAGAGGAGGAAGAGGAAGAGGAGGAGGAAGAGGAAGAAGAGAGGGAAGAGGAAGAGGAGGAGGAAGAGGAAGAAGAGGAAGAAGAGGAAGAGGAGGAAGAGGAAGAAGAGGAAGAAGAAGAGGAGAAAGGAAGGAGGAAGAGGAGGAAGAGGAGGAGAGGAGGAAGAGGAGAAGAGGAACGCAGCGAGAAGGAGAGGAAGAGGAGGAGGACGAGGAAGAAGAGAGAAGAGCGAAGAAGAGAAGAGAGGAGGAGGGAGGAAGGAGAGGAGGAGAGGAAGGAAGAGGGAAGAAGAGTAAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGCAGTTTTACCAAGAGAGTTGTACAGAGGCACGTTGAAGAGAAAACAAGCTAGACACAGGGAAGACAGAATGAACCAGACACTGAGAAGAAACCAGAAAATTAGAACAGATTACCAAAGTTAGTATGAGGTCAAGCAGAGCAATTCAGGAGAAGCCGAGAGAGAAGCCAGACTGAATCAGTCAGCTTGGAGTGGAGTTTGAACCAGAACAGCTGAGTTGAACCAGTCAGTCAGAGTTCAGAAAAAGCCAGAAAGGGTTGACTTATTCAGCAGTAAGTCTCAGAGGCCAAGATAAGATTGTACGGAGGCTAGAAGCTTCCAGGACGAGGCCTAGGTTAGCAGACAGCGGCAGTGAACCTGTGAGACATTTACATCTGGTAAATCAAAGCTACTTTTCCAGAGCTATCCCTGACAGCACCCTCCTTGGAGGGAAAGGAGCCGAAGTGAGTCCCCAGGCCACATGTCCCGCAGAAGCTTGGCCTGCAGTTGACAGGAAGGACAGGGTGATCTTTGTGACAGGTCACTCTGTCACCCTCCCCAGAGCTCCAGTCTTCCTGACACCTCTCCCCAGCGCCCACTGAGGGCCATCTGGGGAAGGCGCCCACTGACTCAGGGTGTCCCCATGGTCACTGCGCCACCCACATCTGCCTTAG
Seq C2 exon
GCCCTGTCGGAGATGGACGAGTTCAAAAACCTGGACAGTGACATCGAGGGCTCCGCCAAGCGGTGGAAAAAGCTGGTAGAGTCGGAAGCGCCGGAGAAGGAGATCTTCCCCAAGGAATGGAAGAATAAGACTGCCCTGCAGAAGCTGTGCATGGTGCGCTGTATGAGGCCGGACCGCATGACCTACGCCGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(2.7=48.8)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTTCCATGAAGAAGGAGCT
R:
TTGACGGCGTAGGTCATGC
Band lengths:
317-2105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]