GgaINT1011581 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1121777-1126389:+
Coord C1 exon
chr18:1121777-1122037
Coord A exon
chr18:1122038-1125963
Coord C2 exon
chr18:1125964-1126389
Length
3926 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
ACTTCATTTTCCCTTTTCAGAAG
3' ss Score
10.97
Exon sequences
Seq C1 exon
GTGGATGACCTGAAGGCCAAGCTGGCAGCCCAGGAAGTGGAGCTAAAGCAGAAGAATGAGGATGCCGATAAGCTGATCCAGGTGGTGGGTGTGGAGACAGAGAAAGTGAGCAGGGAGAAAGCAGCTGCTGATGAAGAGGAGCAGAAAGTGGCACTCATCACCCAGGAGGTCCAGCAGAAACAGAAGGACTGTGAGGAGGACCTGGCCAAAGCTGAGCCTGCCCTGGCAGCTGCCCAGGCTGCTCTGAACACCCTCAACAAG
Seq A exon
GTAGGGCTGGGACTCCCATGGAAAGCTGGCATCTCTGCAGTAGGGTCTGTCACTGCCATCCTCTGGCCCAGGTTTGGGGTGTTGTGTTGATCCCGCTTCGCTTCCTTCCTGGGTTGTGCATACTTGGTCCAGAGGCTGCTCCAGTTGCCCTTCAGCCATGCCCATAGTGGGCAGGAGGAGCTGGAGGTGGGTTCCTTGTATGCAGTTTTTCTCCACTGGCTGACTCTACTGCTCGTCTTCCTGACCCATGAGGAAGGGGAAATCGCCCTGCTGTCCCTACCAGGTCCTAGAGAAGAGTCAATATGCCAGCTTCATAACTGTTGTAGAAGCTGTACTGTTTTGTTTTGATGAGAGAGAGCAAAAACACTGTTTGCTCTGGGTATTATTATGTGAGCAAACAATCTGCCCAGTGGGAACTGGGTGCCACCCACAGCACCACTGAGGCAGACTTGATGTCCAGCTGCTTGGATCCTTTTCCCCAGCACACAGCTGTGTAGCAGGGACTGATGGCTTTGCACAGGCAGCTGCCAAGCCAGCCCCACAGGTTGGCATTCACACTGGTGATGAACGTGGGCCTCCTCTGAGTCCCCATGTGGTCCATCAGTTTGGAAAACAACTTGTGATGGGAGGGCTCACATCCCCCTCTTGGGGGGACAAAACAGTGTGAGCGTAGGGGCTGGCCTGGTCTTCTCCACCTGACTCCATGTGTGGGGCAGGATTCCTCCTGCCCTCTGCTCTCCTAAGGCATTTCTCAGGCCTTGCTGAGCACACTGTGTGGCCCCACAGGTGCAGTCACAGCTTGGCTTTCTGCTTGACACAGAAAGGGCTGGTGCTGAAGCCTCATTCCATGTTTGGGTTTATCCAGCAGAGAGCTGTTGCTGAGCAGTCTTTGGGTGGAATGACTTCTTGGCGGGGCCATAGGTTGCTGCAGACAGCACCACTGCAAAGGGAGAAGCCACTGGGGAAATCAGCAACCAGGAGATGGCCTCCTGCAGCCAGTGGTGTCCCAAAGGGATTGATTTAAGGAAGGATTTGTTACTTTGGGAAGATTTTTACAATTAGACTGGTCCAGGAGCTCTGGACTGAGCATCCTTGCAGCCCTGCACTGAGACGTGCCTCAGCGACACATTCCTGCCATTGGTCTCCTGGCTGCAGCGAATGCAGCACCCGGAGCAGCAAGCTCCTGCTACACAGCAGGCAGAGAAGAGGCCGTGCACCAGGTGCAGCCAGAAAATCAGAGTTATTTCCATGATCAGAATGGCTCAGTCATGCCTCCAATCATAGCTCTGCCTTAGAGGAAGACAAAACGTGTCACCAGGAATGGGTTTCCAAAGCAATGATCTCTCCCCAGAGGTGGAGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTAAGCTTTTGTGTGATGGTTGGACTAGATGATGATCTCCAACCTTTCTGCTTCTGTGTGGCTTTGCTGCGGGGCTATGCTGTTTTGGCTCTTACTCCTGGAGTTGAAAGGGCTGTACAAAGGGGCCGTGTCTGCATCCTCGTTACTTGTGGTTTCATGTTGGATTTGCATAAGGTTGCTGGTTTTTTTCCTAGATACCTGCAAGCAGCATTAGCAGAGCTCTCTAGGGCAAGAAGCAACTGCAGGTTTGTTCAAACTGAAGCTGCTGCAGCCTCTCGTGCATCCCTTCACTTTAGTGCTCACAGCTTCTGGTGGCAGTGTGAGTGTCTGAGGCAAAGTGCAAGGCAATTTAAGGTGTCTCTATCTGTATGCATAAATAAAAAGTTCTGTCTTGCATACCTCCACACTGCCTCTCCTGTCCTGAGCAACCACCACAGCAGTCCTGGAACCCAACGTGGGGCTCAAACCCATAACCCTGGGATTAATAGTCCCATGCTCTACCCACTGGGCTACAAGAGTTACTTGTATATGTAAACATGTAAATAGTAATTAAGATATTTATCACATGGACTGTGATGAATGCGATGTAGAGGTTATTGTAGGCCCAGCAGAGAGAGCACCTCCAAAATGAGAAATGCACATCCATATATAATGCTGTGTTTGAAAACATGGGAAAACAGGTTGTAGAGATAGAGAAAAAAGCCCTTTTGCCTCTCACAGTGCTCTTTGCTCATGCCATGGGCATGCCTGGACTCTTTCTCAGCACCCACATCCTGTAGGCCCTGGAACACAGGACACGGGACTTCATGGATCTGTGCAGCCCACTCTCCTGTTTTGGGGGTGATGATGGCATACTGCCCTGAGGACTGCCTGCCCCCCCGTGGGTCTCTGTTAAGCACTGTGCAGTTCTCCAAGAGGAGACAGCAGCTGTCCTGCAGAGATGGGTGGGCAGCTTGGAAAGGTGGATGGTGCTTGGCCAGTGCTGCCCAGTGTTTGCATGGATGACGATGAGCCAAAGACAGTGCCAGTATCAAAAGCAGTGACCCTCCTCCAAGTTGTGTGCAAGGGGTATACCCGGGATGGTCCAGAGACATCCAGGGATGCCACAGTGATCAGTGTTTCTGTGGCAGGCGTGTTGATGCAAGCATCCTCACTCCAGTTCCCATCCTGCAGGTGTGCCAGTGCATGGAGGAAGAATTCAGAGCAATGTACTGAGTTGTCCTGCTGTGGAAGGGCTCTCTTCTTGGTGAAAAAGCAGCAGTACCAGCTCAGCATCCCATTACCAGGGAGACAGAGGTTGAACGAGGACTGATGTCAAAGCCATCCCTGACACCCCAAGCACCAGAGCGCTGCTTGTATCCAGCCAAGCAGGGACTCGGGATGGAGGAGAGCTTTCTGTGGTGTCCCTCTGTGCCCACAGTCAGCTCCATGTCACTGAGCACGTTAATTAGAGACATTTTATACCACAAGTGCACACAGCTCCCAAGGGTCTGTCTCTGTCTGCTTGATTATTAACAAAAGCTAGCAGCAAGCAGAGACAGCGCGTTTGGTGACAGCTTCGTAGCTGACACCTTTCTCCCAAAAACAAATGCTCAGAGGTACCAAACTTGCTTCAGTAGACAAACTGATGGAATTAGAACATCAGAGAATGCAGATTAGAAGTTAGTGAGAGCTGGTAAAAACAGGGACTACAGAAATTCATAGATTTTTCTTAAACGGGTATTGATTCTAGCCCTTGTCCTTGTTTTGGCTGCAGCCTGGGATCTGAGAACAGCAAATTCACCTGTGCTGTTTTTTTCCCATGGAAAAGCTAACTTGTGTGTGCACAGAGACAGGATTTAGGTGTTAGCAGTGTTCTGTGCTTAGGTCAAGATTTGACCTGCCTGCTGTTAGGGATGCACTGAAACTGCCTGGCTTGGCAGAAGGGAAGATCAAGCATGCCTCTGGGAATCAGCCCATCCCTATTGAGAACCAAGCAGCTCTCTCATGCGGAGACTGCTCTGTTAAAGAGCGTCGGTTGGAGTGCCTGAATTGGGGCTGGATGTTGGAGACATGGCTGCATGCAAACTGTAATGTGTGAGTGTCTCTGGCACGGGGAGAAGCTGAGCACCAAGGGAGCATGAGCTGCCCTGCAAGACAAGTCTTAGTGGGGCTGGAGACTGCTATACAGAGGTTGTTATCTGGAAAGGTTTCTCTTGGCCTTATCCCATTCTAGCAGGAGTGCACAAAGCCCCTTTCTGTAGAGCCCTGGGCCCAGGGAAGGGTTGGGAGTGTGGGGAGGAAGAGTGTGCTGTGCTGGTCCTGGGTGGGAAACCAGGAGCTGAGTGTGGGAGTGGAGCACATGCCATAAACGTGCACATTGGTTATTGAGAGGCAGTGACTTCCAGGTGGAGTAAAACCAATTTATCAGATCAGCATTTCAGGTGCCTGAGTATATTAGCAGTGGAACAAACAGAAAACCGTTTTGTTTTTGTCTAATGACTTCATTTTCCCTTTTCAG
Seq C2 exon
AAGAACCTGACGGAACTGAAATCCTTTGGGTCACCACCTCCGGCTGTCAGCAATGTCACCGCTGCTGTGATGGTGCTGATGGCCCCGGGAGGGAAGATTCCCAAGGACAGGAGCTGGAAGGCAGCGAGAGCCACCATGGCCAGGGTGGATGCGTTCCTGGACTCCTTGATCAAGTTCGACAAGGAGAACATCCACGAGAACTGCCTCAAAGCCCTCCAGCCTTATTTAGAGGATCCCAAGTTTAAACCCGAATTCGTAACCACCAAGTCCTACGCGGCAGCCGGCCTCTGCTCGTGGGTGGTGAATATCGTGCGCTTCCACGAGGCCTACTGCGACGTGGAGCCCAAGCGGCAGGCCCTGAGCAGAGCCAACGCTGAGCTGGCGGCTGCACAGGACAAGCTGGCCAGCATCAAGGCCAAAATTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF127772=MT=FE(25.0=100)
A:
NA
C2:
PF127772=MT=FE(41.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]