GgaINT1011787 @ galGal4
Intron Retention
Gene
ENSGALG00000026914 | DOK3
Description
docking protein 3 [Source:RefSeq peptide;Acc:NP_001076832]
Coordinates
chr13:9507212-9507671:-
Coord C1 exon
chr13:9507381-9507671
Coord A exon
chr13:9507300-9507380
Coord C2 exon
chr13:9507212-9507299
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCC
5' ss Score
7.91
3' ss Seq
CTCACCTCCCTCTGTTCCAGGGC
3' ss Score
11.71
Exon sequences
Seq C1 exon
CGGACCTGGAGGAAGATTCGAGCACAGCTCTTTGCTGCCAGCCCCTTCGGCGTGGCCCGCATGGAGAAGTTTGATGCACGGGATCACGGCACAGTGTCTGACATCTCCCTGCAGCGCTGCGCCCGCCGTGTCATCCGTCTGTCCGACTGCGTCTCCGTTGGCCCCATGGGCACTGAGAGCTGCCCCAAAGCCACTGCTGCCTTCTACCTCACCACCACCGAGAAGAACTACGTGCTGGCAGCCGAGCAGCGGGATGAGTGGATCGAGCAGCTCTGCCAGTTGGCCTTTCAG
Seq A exon
GTATCCCCTGCATCCTCCTGCTGCTCCAAGCCAGGAGAATGAGGGTGCTGGGGGGGCCGTGCTCACCTCCCTCTGTTCCAG
Seq C2 exon
GGCAAAAAGGAAGCAGCGCAAAGTAGCAGCACCGGTCTGCAGCCCATCCCTATGGAGGAGAACTGCCTCTACTCCTCGTGGCAGGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026914:ENSGALT00000043441:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0217412=IRS=PU(1.0=3.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCACCACCGAGAAGAACT
R:
ATCCTGCCACGAGGAGTAGAG
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]