MmuINT0052590 @ mm10
Intron Retention
Gene
ENSMUSG00000035711 | Dok3
Description
docking protein 3 [Source:MGI Symbol;Acc:MGI:1351490]
Coordinates
chr13:55524481-55527637:-
Coord C1 exon
chr13:55527332-55527637
Coord A exon
chr13:55524581-55527331
Coord C2 exon
chr13:55524481-55524580
Length
2751 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GACTTAAATCTATTCCTCAGGGT
3' ss Score
7.25
Exon sequences
Seq C1 exon
AAATGCTGGCGCAAAGTGTGGGCTCTGCTGTATGCGGGAGGCCCATCAGGGGTAGCTCGGCTAGAAAGCTGGGACGTGCGTGATGGTGGCCTGGGACCAGCAGGCGACAGGTCCACAGGGCCCAGCCGTCGAGGGGAACGCCGGGTCATACGCTTGGCTGACTGTGTATCTGTCCTGCCTGCGGATGGCGAGAGCTGTCCCAGGGACACTGGTGCCTTCCTGATTACCACCACTGAGCGAAGCCACCTGTTGGCTGCACAGCACCGCCAGTCCTGGGTGGACCCCATCTGTCAGCTGGCCTTCCCG
Seq A exon
GTGAGTATGACATGAACTAGCCTGCTGGGACCACCTCACCCCGCTCACCCATGTCCTTGCTTAGTCAGATCCTGCCACATGGTAAACATTGCCAAACCCTGTGAATATGAGCAACAGCTTAGAAACCCATAGAAGGATCCTATATTCTATGCATGTTATAGAGAAAATGAAACCGTAGGTCAGGAGGATGTGTGGGCCTGAGCCCTGAATGACAAGAGCAAGCCCCCAAGGCAGTGGTCTGAGACAGGTGTCTGAGCCAAATGGACAGGTACTGGAATACAATGGTATCATGAGCAAAGGCCCTGGGGCAGGAAAACATGGTGTGTGTAAAGGAGCAGAAGTAGGCCAACCAGCGGCTTAGGCACACAAGTGTGAAGACATTGGAATGTTCAGTGAGAGCCTATTGAATCCACTTTGGGCCACGTGTGGGTGAGAGGTTTTCTGATGGACCAAAGGGGATGGCTTTGGGTATTAAAGCCAGAGACTAATGGTGGTAAAGTCTCTGGGTTCATGACAGAAGAGACAAACACGCCTGACTTCCTCAGCAAGTTGATCTTGGGAGGCAGAGCAGCTGGAGAGATGGCTCAGTAGTTAAGAGCACTGGCTGCTCTGTGGAGGGCCTGGGTTCAATTCCCAGCACTCACATGGCAGCTCACAACTATAAGTCCCAGGGGTTCAGACACCCCTTTCTGACCTCCATGGGCACTGTACGTATGTGGCACACAGACACAGCATCCTTACATATAACAATAGGTAGTAACCACTTTAAAAAAAAATCCATCAGCCAGGCGTGGTGGCACACGCCTTTAATCCCAGCACTCGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGTTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAAAAACAAAAAAAAAAAAAAAAAAAAAATCCATCATGACGTCATTATACGGCTGCCGTTCTCCCACTTGACATATAGCCCAGAGAATGAAAGGTGTGGGCAGAACGTGGGCCAGTGCTCACGGCAGCACTGTGTAATCCTCCACACTGAGACATCACGTGACCATCCCCCAAGGAAGAGAAAAACAGGACCTTGGGCTGGGCCAGGTGCCACAGTCTATGACCTCAGCACTTGGAAGGCAGAGGGAGAAGGATCAGTTCTGTGGCCAGCCCCAGGCCAGCCTGGGCTACTTGAGACCCTGTCTCAAAACCAAGATAAAGAACAGCTAATGCTGAAATATGACATAAGACACCAAAGGGCAACATGTGCGATTTCCTAATGTTTAAACTTCACAGGACTCTCAGAATAAGGCTATCTGCATAGCCAGGCGGCAGGTGCATGTGGTGCACAGGGAGAGGGTTCCGACAGCTGCCTCATGGGGACACGCTTCCGTTGGACACAATGACAGGTTCTGGATTAGGTGCTGCTGACAACTGTACAAACTTGTGAATGTACCAAAATCCACCAAACTGGGCGCCTTAAAATAGCAATGTTGAGGGCTGGGGGAATGAGTCTGTAGTTAAGAGCACTGACTGCTCTCCCAGAGTAGCTGAGTTCAGTTCCCAGCACCCACATGGCAGCTCACAGCTGTCTGTAACTCCAGTTCCAGAGGACCTGACACCCTCACACCAATACTCATAAAATGAAATTGGAAAAATAAAAAAGAATAGTAGTATTGATTTGTATTGTTGGTTTGTTTTGAGACAAAGGTTTCTCCGTGTAGCCCTGGCTCTTCTAGAACTTACTCTGTAGACCAGGCTAGCTCTGATCCACCTGCTTACCTCCCAAATGTTGAGATTAAAGGCATGCACCGCTTGCACAGCTACTACCATACCACTGCCCAGTTTATCACTTTTGTTTTTTTAATTAAGACATGCACAGAGCCAGGCAGTGGTGGCACACTCCTTTAATCCCTGTGTTTGGGAGGCAGAGTCTGGTCAGTCTCTGAGTTCAAGGCCAGCCTGGTGTACAAGGAAATAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAATAAGAATAAAAAAGGAAAGAAAGAAAAGCACAGCTGGTCAGTGGTGGCACACACCTTTAATCCTAGCACTTGGGAGCCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGCTCTACAGAGTAAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCAAAAAACAAAAACAAAACAAAAGAAGAAAGAGAGAGAGAGTAAAATAGAAAAAAGAAAAGCACAGGACGAAGTAAAGGAAGAGGAGGCGGGGTTTGGCTTTGGCAGTGCTCATGGGTCAAGGTGATCATGGTGGCCATTTCCTGACAGATAGGACTGGATGTAGGATGGAGGTCAGGGGAGGTCAAGGGAGACCTGTAAGTGACTATAGAAGAAGCCGGGACATTTGCTTGGTGCTACCCCTGCCTCTATACTGCTGCATGCCACCCAGAGCTATATGCAAGCCAGCACATGTGCTTGCAGTTGCTTAGTGCCTTATGGCACCAGGAATAGCCTTACTCCAAGACCAGCACTGCCAGTGGAGCCCAGTGGGGAGTGCTGCCCCATAGTACAGATAGGAAATGACTCAGGAGAGCCCGGCAGTGTGGGTCAGAGTGGGACCTGGCGGTGGAAGTTTTGTCTGCTGAGCCCATGGAAGGGAACGGGGAAAAAACAGGGTGGGCTCTAACGGACGACTTAAATCTATTCCTCAG
Seq C2 exon
GGTACCGGAGAATGTTCGTCAGGATCAGGACAGGCTGAGAGTCCAAAAAGGGGCTTTGTTCCCATGGAGGAAAACTCTATCTACTCCTCCTGGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035711:ENSMUST00000047877:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=NA C2=0.544
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(85.5=98.0)
A:
NA
C2:
PF0217412=IRS=PU(1.0=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types