GgaINT1012584 @ galGal4
Intron Retention
Gene
ENSGALG00000005935 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr8:13010086-13010386:+
Coord C1 exon
chr8:13010086-13010127
Coord A exon
chr8:13010128-13010147
Coord C2 exon
chr8:13010148-13010386
Length
20 bp
Sequences
Splice sites
5' ss Seq
ACTGTGGCA
5' ss Score
-11.61
3' ss Seq
GTGGCAGCCTCTTCTTTTTGTCA
3' ss Score
-5.1
Exon sequences
Seq C1 exon
TTTAGTGAAAACAGGTTGACTGAAAAGATAAAAAACCCAACT
Seq A exon
GTGGCAGCCTCTTCTTTTTG
Seq C2 exon
TCATCACAGGTGGCGACAGACAAGGTTGCAGGAAAGCTGAGCTCTACTCTCTCATGGGTGAAGAACACTGTATCGCACACCGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTGCCTCCTTACACACTACATCCTCCTCTACCACTCTGTCTACACCTGCGTTATCACCATCCTCACCAGCGCAGCTGAGTCCAGACGACCTAGAATTACTGGCTAAACTTGAGGAGCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935:ENSGALT00000009552:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]