BtaINT0058296 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50905459-50906946:+
Coord C1 exon
chr3:50905459-50905512
Coord A exon
chr3:50905513-50906716
Coord C2 exon
chr3:50906717-50906946
Length
1204 bp
Sequences
Splice sites
5' ss Seq
ATGGGAAGT
5' ss Score
3.37
3' ss Seq
ACTTTTATTTTTGTACTTAGGTG
3' ss Score
10.13
Exon sequences
Seq C1 exon
TCTTTCTTGGGGATTCTTCCCTCAACAATAAGAACTCCCTCATCCCATTCCATG
Seq A exon
GGAAGTAAGTTCTAAAATAGAAAAGTTATTGGAAATGAAAATTAGAGGTAGGTCATGTATCTGTTGATGAGGTGAGAAGGCAAGACTGGGGCAACCTATGAGGAGGGAGTAGTATCTGCTAAGATAGTCTAGGTGGCCTTTTTATTTGTGTATATATATATATATATGTTGATGTTTTAATTTGTGTGTGTTTAAATTGCTATATGAAACCAAGGTTAGCTGAGAACGTCTACATAGAAAGTAGTTTGTAGTCTTTTGGTCATTTACCTTTTGTGTAAAATTTCAGATTTGTATGCACATCTGCTTAAGACACTGGCATGATTTATGAAGCATATATCAGTTATATAGTTATATAGTTCATTGAATCTTGCAGATGGAAAGGTTTTAGGATTTGAAAGGATTTTCTGGTCCTGGTTGCCCACTTAAAGCAGAAATTCATCTTCAGTCAACTGTTAACTTTTGACTCTTAGAATGTCTACTCTTTCTAGGCATCCTATTCTATTTCTGACTAGTTCTGTTTGAAAATTGTATCCTGAAACTCTCTTACTCTGTTAACTCAAAACATTTATCATAATTTTGTTCTTCTAGAACTAAATCCTCTTCTAAGAAAACACTCAGTAGTTTGAAGGTTTATTATGGATCTCATTTAATCTTATTTATGCTAAGCCTAGTTTTTGTTGAATTGTTGATCATGTTATAGGATTTCCCTGTCCTAATCACCTAATGGACATGTTTTGGTTCCTTGGCTTTCAACTGTTTTTGACTACAACCCAAATGAAGAAGGTATTTCATATTCCAACTCAACATACCCACACATACCTGCATGAAGTATGTAGTTTTAATACGTATATGTAACTGAGGCAGAAATTTTGTGACAACATATCTTTACACTGACACTTTCTGCTCCTTTTCATTTTTAAAAAATGCTGGTGTTATCTATTAAATTTATTTTATCACTCCCTGGTGGATTTCAGCCTGTAGTTTGGAAATCACTGTTGTAATTTGTGCGTGCTACAGAACTGAAATATGGAGTTTCCAAAAGCTGTATGTTAGAACAGTCATTGCTAAAGCAGGTGTTACCTTTATTAACTCAAAGAGAATATTCTGATTGCTGGTTTTCAAATAGGACTAATGAGAATTATCAAGTTCTTGGTAATGCATAAAATAAAACTGAAATATATGTAACTTTTATTTTTGTACTTAG
Seq C2 exon
GTGGCGACAGACAAGGTTGCAGAAAAGTTGAGTTCTACTCTCTCATGGGTGAAGAACACAGTGTCACATACAGTCAGCCAGATGGCCAGTCAGGTGGCAAGTCCATCTGCTTCCTTACACACTACATCCTCGTCTACCACACTGTCAACACCAGCCCTTTCACCATCCTCACCGTCACAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAACTGGAGGAACAAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363:ENSBTAT00000040289:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCTTCCCTCAACAATAAGAACT
R:
TTTGTTCCTCCAGTTTAGCCAGG
Band lengths:
270-1474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]