GgaINT1013096 @ galGal4
Intron Retention
Gene
ENSGALG00000004960 | FBN1
Description
fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]
Coordinates
chr10:9675807-9677205:-
Coord C1 exon
chr10:9676974-9677205
Coord A exon
chr10:9675982-9676973
Coord C2 exon
chr10:9675807-9675981
Length
992 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TGGATTTCTTCCTTCCTTAGACA
3' ss Score
8.44
Exon sequences
Seq C1 exon
ATGAAAATGAATGTTTAAGTGCACACATTTGTGGAGGAGCATCTTGCCACAATACTTTGGGAAGCTATAAATGTATGTGCCCTACCGGATTTCAGTATGAACAGTTTAGTGGAGGTTGCCAAGATATCAATGAATGCGGTTCTGCACAAGCCCCATGCAGTTATGGTTGTTCAAATACTGAAGGTGGCTATGTCTGTGGATGTCCACCTGGTTACTTCAGAATAGGACAAGG
Seq A exon
GTAAGGGATTCTTATTTTAAACTAACAGACATAAAGGCAACATAACTCACTCCCTTCTCTGTACTGTGGAGCAGCAGAACCAGGGTGTTATCATCAATGAGACATGGACAGGATTGTGGAGGTGCTCGGGAGTTGGATTCACCTGCTTCTTTTGGAGATGGGGGGGGGGGGAGAGCTAACAGAGAGAAGGGAGCTACATGGTTTTAGTGTTAAAGGAAATCTGGTCGCAACTACCAGATTCCATAATTCCTTTTAAGTTACTACTTTCACTTCTCTCTTGCACACCCTAGCAGCCAGCCAAGCTATCTGAGCTCACCTCTTGGGAGCTGACACCTCTCACTCTGATTTGTGGTGTACCACTTGTCCGTTTTAAAAACAAAGCAAAACAAGCCTTGCCAGCTCCAAAGACAAATGATATTATACAACTGGTTATTGGAATTACAACTTCATATGCTCTTATGTTCTTGTATGTTTCATATTCTTATGTGTTCCAAATGAATTACTTTTTGAATAGTTGTCCGTTTTGTCAAGGAAACCAATTTTCACTTGTCCCAGTAGGAGTGTTAGGGCACTGCATCATGTTGAACTGAGCACTCAACTGGAAAGCAGAAAGATTGTGCTTTAAATTTTAGAAGTGACTGGAAGCTTTGGGATGCTCACTTGAACTACATTATGAAAGACCCCAATTCTCAGATTTTTCAGCACCTCCTGAAAATTAACTAACAACTTCTCAGAGCCTAAACTGGTGTTTTTAAATCTGTTACATATTGGCAGGCCTCTTTTAGACAAAGGCCCATGAAAACAGATTCTTGAAATCAAAGGGGTACTTGCTTTGTGATTCACTGAGAATTTTGCCTGTTAAATTTATCAGAAAATTTCCTGGGAAATGAGTGCAACACAGTTGCTTTATTATTTGTATTCACGGTCCCCAAATTTAGCTTTTGATAAGATATGTCTCACTGGAATTAATTTTGGATTTCTTCCTTCCTTAG
Seq C2 exon
ACACTGTGTTTCTGGAGTTGGGCTAGGCAAAGGTCAAGGACAAGAGCTTTCACTCAGCGGAGAAATGGATGACAACTCCCTGTCTCCAGAAGCTTGCTATGAATGTAAAATCAATGGCTATCCCAAGAGAGGAAGGAAGCGCAGAAGTACTAATGAAACTGCAAATGAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960:ENSGALT00000007955:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.305
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
A:
NA
C2:
PF0764510=EGF_CA=PD(5.1=3.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGGAGGAGCATCTTGCC
R:
CTGCGCTTCCTTCCTCTCTTG
Band lengths:
349-1341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]