BtaINT0061052 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002278 | FBN1
Description
Bos taurus fibrillin 1 (FBN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174053]
Coordinates
chr10:62137366-62140277:+
Coord C1 exon
chr10:62137366-62137597
Coord A exon
chr10:62137598-62140102
Coord C2 exon
chr10:62140103-62140277
Length
2505 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
ACGCTCCCCTTCCACCACAGGCA
3' ss Score
9.02
Exon sequences
Seq C1 exon
ATGAAAATGAATGCCTCAGTGCTCACATCTGTGGAGGAGCCTCCTGTCACAACACCCTGGGGAGCTACAAGTGCATGTGCCCTGCCGGCTTCCAATACGAACAGTTCAGTGGAGGTTGCCAAGACATCAACGAATGTGGCTCTGCTCAGGCCCCCTGCAGTTATGGCTGTTCCAATACTGAGGGCGGCTACCTGTGTGCCTGTCCACCTGGCTACTTCCGAATAGGCCAAGG
Seq A exon
GTAAGCAATGCTGGTCGTGGTTGGAGGCTTTCTCATCCACAGAATAATTAAGTATATTGAACTCAAAATGACCTATCCTAGTACCATTGAACCATGCTTTTTATAATCCTTGAGTTAATTCCAGTTAGCTCTGCAAAGGTTTTAGGTTATTTTATTTGAAGGGGGACATCTAGATTTCTGGAAATTCATAGAACATGGAACAAAATAATGAAACGACATTGTAAATACCTCAAGATATGGCTTATCTATCTCCTTCTCTTGATCCTCACATCTTGTTGGAAGGCAACTCGTTTCTCAGGAAATACAGGGACTGTGATCCCTGACAGAGCTGGACTCAGATTGCATATTGCTGATGCAACCTTCTCCTGGGGCAAGCAGGATTCTGTCTTGACTTAAAATGCTTTCATGTAGCTCCTGTTAGGATAAATCATAAAGATATCTTTTGGGGAGTGCTTTAGGGTTTCAAAGTATATTTTACATTTTAGACTTAAATTTACATTAAACGTTGCAAAAGAACTTTAAATATAAGAGTTAAAATAATTATTATATTTTCCAGGTAGCATACCACATTGTATTGTGAGAGTTGGGGCTGGGAAGATATATTTTTATTCTATTTAGTAATATAAAAGTTACTATTACATTTTCAAAGTTTAGGTCTTCTTCCCAGTTGAATTAGTCTGGACTTGACTGTCTTAGTTTTGGCTATCTTGTGAAGGAGTTCACATTTTAACTTTTTAATTAGGAACACAGAGTGTATTTAATTAAATACACACACACACATATACCAATGCACACACTTATATATACTCCTCCCAACAAAAAGTCACATAGTCCACAACACACACATATGTGTATATATCCAATTGTTAATTTTGTGGTCTTTGGTTTCTTGACACAGAAACATCAAGTGATTCATTTTGGGGTGTGTAGAAGGTAAAAGAATGTTTCATGGGAAGCGCACAGAATGCCAGCAATAGGACTCAAATTCCCAGATGTTTGTGTCTGGCTCTCAGTAGACTCATTCTTTATAAATTTAATGCCAGAATCATTTTCCCAGCAAAAATTGTGACACTCCAAACTGGCTTCTGGCCAGTGGGACTTTATAGTCACACTTCTTGTAAGTGGTGTTCCAGGCATATGAAAATACTGGGAGTTCTGAGAAAGGAACCAAAGCCTGTGAATTTGGGGTTTGCTTCCAACAATTTCATAATTATGTGAATGCACACAAAGAATGAGCACGTATCCATATTATTGTTTCTACATATTTCATGGTAAAAAATTAAAGGATGAGGAAAGGAAATGTGTTGTGCTCAGCAGGATTACAGAAAATACTAGAAACCTGTAAATTGCTGCAAAATACAAAAAAAAATGTTAATGGCATTGTATTTTGAATCTTAAGGGCATAAAGGAAAATGAGTTATAAAAAATAGATCAACTAATACAGAGAGAAATAAACAGTATTTAGTCTACATTATGACCTATTAGTAGACCAATTAATAGAAACTCACCCATTTATAACATTTTAGGCTCCTCTGTGAATCACTAGAGTGGACAAGCCTATCCGAATCTAAAGATTCTTTTAAGATCATTCAGCTATTTCAAAACATTTTGAAAAAGGAGCCTGATAAATACATTCCAAGTGACCTATGAAATAGTAAGCAGAATAACAAAACAAGGTACTTGTGAGACATGCAAGCCTCCCTCCATAACTTGGCTTTAAAAACTGAAAGGCAAAGAAAAACAGCTGAACTAGTTCTCTCTTGGGCATGGGTTTGTTTATCCAACCTCACATGAGTCAGAGCCAGTGGACCTAGTGGTTTTGAATGACTTGAAACAATTTCCCACAGTTGGGCAAGCTCTGATACACGTATTTAATACATTGCATATCTTCACAATATATTTCTAAATCAACCTAAGTTATTACCTAGAGCTTTCTTTCTATCTTCAGGAGCCAAAGTGAGAGATCTGATAATAGGAGAGATTGCTCAGAAGCTGGAGTGGTGAAAAGTGGTGCTGGTGGAATTGGAGGTGGCTGTAATGGTATCAGTTAAACAGGGAGAGGGCAAGGAACTGAACACCGATGTCACATACCTCTCTCACTCCTGTGGAGCCTATTTTATAAGAAGAAGGCAATTTTTATTCATCCTCCCAAGTCACATGGTTTCCCCCTCATCTTCCACTCTTCTCTTGTTTCCACTCCTTGTCTCCTCTCCACCAGTACAGCGAAACACCTGCCACATTATGTTTGGGAAATAAAGGGGCAAGTAAGTATGCAAAATAGGGCCTTGAGAGATAGTAAAAAGAAATCAATCAACTCAGGGAACTGAGAATTCAAGACCAAACACAGAGGGCTTCAGTATGGTTCTCAGCACCAGCCCATCATCCAGTGGACACATAATCAAGGGCTGAATGTCACCAGGCAGGATCTGGGCTTCACTAGAACTCTCGCTCCTCCTCCATCTCCCAATTCTAATGAAAACTATCTACGCTCCCCTTCCACCACAG
Seq C2 exon
GCACTGTGTTTCTGGAATGGGCATGGGCCGGGGAAACCCAGAGCCACCTGCCAGCGGTGAAATGGATGACAACTCACTCTCCCCAGAGGCTTGTTATGAGTGTAAGATCAACGGCTACCCCAAACGCGGCAGGAAGCGGAGAAGCGCAAATGAAACAGATGCCTCCAACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002278:ENSBTAT00000002944:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.475
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=PD(9.8=5.1),PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
A:
NA
C2:
PF0764510=EGF_CA=PD(5.1=3.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development